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Mutant Information

Mutant Name	FN1531-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1531-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	18941317	C-T	Homo	UTR_3_PRIME
SBS	Chr11	12185485	T-G	HET	INTERGENIC
SBS	Chr11	8676034	C-T	HET	INTERGENIC
SBS	Chr12	12561331	C-T	HET	INTERGENIC
SBS	Chr12	1898014	C-T	Homo	INTRON
SBS	Chr12	19746825	A-T	HET	INTERGENIC
SBS	Chr12	19746826	A-T	HET	INTERGENIC
SBS	Chr12	25110381	T-A	HET	INTERGENIC
SBS	Chr12	3295040	T-C	Homo	INTERGENIC
SBS	Chr2	31782805	C-A	HET	INTRON
SBS	Chr2	35185984	T-G	HET	INTERGENIC
SBS	Chr2	7392008	T-C	HET	INTERGENIC
SBS	Chr3	15265725	T-C	HET	SYNONYMOUS_CODING
SBS	Chr3	16340082	T-C	Homo	INTERGENIC
SBS	Chr3	20510184	G-A	HET	INTERGENIC
SBS	Chr3	21778418	G-A	HET	INTRON
SBS	Chr3	32364484	C-T	Homo	INTERGENIC
SBS	Chr4	27692997	T-C	Homo	INTRON
SBS	Chr4	33801321	T-C	Homo	INTERGENIC
SBS	Chr4	792950	T-A	HET	INTERGENIC
SBS	Chr5	19456539	A-G	HET	INTRON
SBS	Chr6	2617627	C-T	HET	INTRON
SBS	Chr7	14428935	A-G	HET	INTERGENIC
SBS	Chr7	14810792	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g25780
SBS	Chr7	1546949	T-C	Homo	INTERGENIC
SBS	Chr7	15914161	G-T	Homo	INTRON
SBS	Chr7	9728825	T-C	Homo	INTERGENIC
SBS	Chr8	12832522	C-A	Homo	INTRON
SBS	Chr8	248535	T-C	HET	INTERGENIC
SBS	Chr8	27300988	T-A	HET	INTERGENIC
SBS	Chr9	1072166	C-G	HET	INTERGENIC
SBS	Chr9	14478317	G-A	HET	INTERGENIC

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	5007865	5007871	6
Deletion	Chr2	5226585	5228052	1467
Deletion	Chr1	5965564	5965565	1	LOC_Os01g11140
Deletion	Chr2	6574686	6574718	32
Deletion	Chr10	7461297	7461301	4
Deletion	Chr1	7903367	7903368	1
Deletion	Chr12	9301670	9301671	1
Deletion	Chr2	14521857	14521866	9	LOC_Os02g25040
Deletion	Chr1	16495975	16495976	1	LOC_Os01g29430
Deletion	Chr5	19517060	19517076	16
Deletion	Chr7	21264426	21264464	38
Deletion	Chr4	22469679	22469680	1
Deletion	Chr11	27254299	27254300	1
Deletion	Chr3	28601199	28601201	2	LOC_Os03g50150
Deletion	Chr1	29538958	29538962	4
Deletion	Chr6	29698675	29698692	17

Insertions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	12717709	12717709	1
Insertion	Chr11	28399052	28399053	2
Insertion	Chr12	13003863	13003863	1
Insertion	Chr2	16751019	16751021	3	LOC_Os02g28340
Insertion	Chr2	25893500	25893506	7
Insertion	Chr3	25355891	25355911	21	LOC_Os03g44910
Insertion	Chr3	3839673	3839730	58
Insertion	Chr4	731102	731134	33
Insertion	Chr4	8178339	8178384	46	LOC_Os04g14580
Insertion	Chr5	11573423	11573424	2
Insertion	Chr5	28560675	28560675	1
Insertion	Chr6	14142962	14142965	4
Insertion	Chr6	18674478	18674478	1	LOC_Os06g32090
Insertion	Chr6	19429525	19429584	60
Insertion	Chr7	23815210	23815211	2
Insertion	Chr7	27764597	27764676	80
Insertion	Chr8	12511620	12511622	3
Insertion	Chr8	804772	804772	1
Insertion	Chr9	4900406	4900406	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	743177	35479073
Inversion	Chr3	2713675	3084916	2

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	20128805	Chr3	3084990	2
Translocation	Chr10	20129590	Chr3	2713677	LOC_Os03g05480
Translocation	Chr10	20350302	Chr6	10075406
Translocation	Chr10	20350306	Chr6	10058612	LOC_Os06g17350
Translocation	Chr8	21357466	Chr6	607902	LOC_Os08g34070

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