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Mutant Information

Mutant Name	FN1532-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1532-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12701769	G-A	HET	UTR_5_PRIME
SBS	Chr1	21442377	G-A	Homo	INTERGENIC
SBS	Chr1	41317043	G-C	HET	INTERGENIC
SBS	Chr10	5203955	T-C	Homo	INTRON
SBS	Chr10	5880537	C-T	HET	INTRON
SBS	Chr11	11352503	T-A	HET	INTRON
SBS	Chr12	21863330	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g35880
SBS	Chr2	10189574	G-A	Homo	INTERGENIC
SBS	Chr2	29674425	C-T	HET	INTERGENIC
SBS	Chr2	3866566	T-A	HET	INTERGENIC
SBS	Chr3	22922136	A-T	HET	INTERGENIC
SBS	Chr3	4794183	T-C	HET	INTRON
SBS	Chr4	12672351	T-A	Homo	INTRON
SBS	Chr4	15474883	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g26530
SBS	Chr4	25274328	G-T	Homo	INTERGENIC
SBS	Chr4	7272963	C-A	HET	INTRON
SBS	Chr4	7927753	T-A	Homo	INTERGENIC
SBS	Chr4	8610888	G-A	HET	INTRON
SBS	Chr5	10519035	C-T	HET	INTERGENIC
SBS	Chr6	25308547	A-C	HET	INTERGENIC
SBS	Chr6	8147442	A-T	HET	INTERGENIC
SBS	Chr6	9650749	G-A	HET	INTRON
SBS	Chr7	613067	C-A	HET	INTRON
SBS	Chr7	9552362	C-T	HET	INTERGENIC
SBS	Chr7	9649965	C-T	HET	INTERGENIC
SBS	Chr8	11818864	A-T	HET	INTERGENIC
SBS	Chr8	18524635	C-A	HET	INTERGENIC
SBS	Chr8	20893446	A-G	HET	INTERGENIC
SBS	Chr8	3108106	G-T	Homo	INTERGENIC
SBS	Chr9	17533148	C-T	HET	INTERGENIC
SBS	Chr9	2992485	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g06360
SBS	Chr9	7137878	G-A	HET	INTRON

Deletions: 35

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	706793	706796	3
Deletion	Chr2	2029437	2029438	1
Deletion	Chr5	2118673	2118674	1
Deletion	Chr5	4033493	4033494	1
Deletion	Chr12	4471085	4471097	12	LOC_Os12g08740
Deletion	Chr10	4532568	4532580	12
Deletion	Chr6	4830711	4830723	12
Deletion	Chr2	5056174	5056193	19	LOC_Os02g09800
Deletion	Chr5	5710405	5710406	1
Deletion	Chr7	6595539	6595540	1
Deletion	Chr6	6788524	6788530	6
Deletion	Chr11	7554229	7554230	1
Deletion	Chr2	7648396	7648398	2
Deletion	Chr11	7713263	7713264	1	LOC_Os11g13940
Deletion	Chr10	8044042	8044051	9
Deletion	Chr1	11775152	11775154	2
Deletion	Chr8	12621362	12621367	5	LOC_Os08g21110
Deletion	Chr6	12788851	12788861	10
Deletion	Chr11	13792998	13793002	4
Deletion	Chr11	14505114	14505115	1
Deletion	Chr6	17237733	17237746	13
Deletion	Chr8	19323577	19323579	2
Deletion	Chr6	20646798	20646799	1	LOC_Os06g35420
Deletion	Chr5	21517090	21517100	10
Deletion	Chr7	22622734	22622735	1
Deletion	Chr4	22859680	22859681	1
Deletion	Chr4	22859692	22859693	1
Deletion	Chr3	24586239	24586243	4
Deletion	Chr4	24729540	24729552	12
Deletion	Chr3	34018676	34018677	1
Deletion	Chr2	34665854	34677461	11607	2
Deletion	Chr4	34864874	34864881	7	LOC_Os04g58620
Deletion	Chr4	34926922	34926955	33
Deletion	Chr2	35546040	35546047	7	LOC_Os02g58070
Deletion	Chr1	38288937	38288938	1

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	19490438	19490440	3	LOC_Os01g35210
Insertion	Chr10	21492816	21492816	1
Insertion	Chr11	23833656	23833724	69
Insertion	Chr12	25570790	25570790	1
Insertion	Chr5	21990366	21990367	2	LOC_Os05g37580
Insertion	Chr6	20660261	20660261	1
Insertion	Chr6	26885360	26885360	1
Insertion	Chr7	24547557	24547587	31
Insertion	Chr8	20461350	20461414	65	LOC_Os08g32970
Insertion	Chr8	21075346	21075347	2
Insertion	Chr8	9451187	9451187	1

No Inversion

No Translocation

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