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Mutant Information

Mutant Name	FN1534-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1534-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 16

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22739468	C-A	HET	INTERGENIC
SBS	Chr11	20050670	G-A	HET	INTERGENIC
SBS	Chr12	12485558	C-A	HET	INTERGENIC
SBS	Chr2	25312869	G-A	HET	INTERGENIC
SBS	Chr2	34222486	G-T	HET	INTERGENIC
SBS	Chr2	34222487	T-C	HET	INTERGENIC
SBS	Chr4	15039254	G-A	HET	INTERGENIC
SBS	Chr4	21523752	A-C	Homo	INTERGENIC
SBS	Chr4	2635080	T-C	HET	SYNONYMOUS_CODING
SBS	Chr4	31287778	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr6	17870050	C-A	HET	INTERGENIC
SBS	Chr6	8212931	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g14590
SBS	Chr6	8235032	C-A	HET	INTERGENIC
SBS	Chr7	15861472	A-C	HET	INTRON
SBS	Chr9	524134	A-G	HET	SYNONYMOUS_CODING
SBS	Chr9	5271313	C-T	HET	INTERGENIC

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	211385	211391	6
Deletion	Chr11	275648	275667	19	LOC_Os11g01470
Deletion	Chr3	1270098	1270102	4	LOC_Os03g03070
Deletion	Chr5	1438671	1438675	4
Deletion	Chr6	2431011	2431012	1
Deletion	Chr1	3012089	3012090	1	LOC_Os01g06330
Deletion	Chr2	4005248	4005251	3
Deletion	Chr10	4572246	4572253	7
Deletion	Chr5	5496289	5496290	1
Deletion	Chr8	5722176	5722187	11
Deletion	Chr8	9883691	9883695	4
Deletion	Chr7	11222425	11222426	1	LOC_Os07g18944
Deletion	Chr8	11795034	11795039	5
Deletion	Chr9	12928937	12928948	11
Deletion	Chr12	13415932	13418930	2998
Deletion	Chr7	13758726	13758733	7
Deletion	Chr7	14203770	14203775	5
Deletion	Chr4	14827805	14827813	8
Deletion	Chr6	15380862	15380901	39
Deletion	Chr9	16153057	16153058	1
Deletion	Chr11	22839482	22839483	1
Deletion	Chr5	25124614	25124675	61
Deletion	Chr6	25647475	25647481	6
Deletion	Chr8	27324420	27324421	1	LOC_Os08g43210
Deletion	Chr6	28866955	28866958	3
Deletion	Chr6	29688219	29688222	3
Deletion	Chr4	31272976	31273005	29

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	19609327	19609327	1
Insertion	Chr10	12215066	12215068	3	LOC_Os10g23820
Insertion	Chr10	2282967	2283022	56
Insertion	Chr2	10030234	10030314	81	LOC_Os02g17430
Insertion	Chr3	24599153	24599155	3
Insertion	Chr4	12143924	12143965	42
Insertion	Chr6	2915008	2915008	1
Insertion	Chr8	3244470	3244473	4

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	15862098	23212218	LOC_Os07g27290
Inversion	Chr7	15862112	23212229	LOC_Os07g27290
Inversion	Chr2	26349494	26659473	LOC_Os02g43670
Inversion	Chr2	26352451	26659574	LOC_Os02g43670

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	3898321	Chr3	28664748	LOC_Os03g50290
Translocation	Chr3	9868125	Chr2	26349498	2

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