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Mutant Information

Mutant Name	FN1536-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1536-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 47

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10485928	G-A	Homo	INTERGENIC
SBS	Chr1	13274729	G-C	HET	INTRON
SBS	Chr1	13513080	C-T	HET	INTERGENIC
SBS	Chr1	23873	T-A	HET	INTRON
SBS	Chr1	25753487	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g45370
SBS	Chr1	29686037	C-T	HET	INTRON
SBS	Chr1	36017094	G-A	HET	INTERGENIC
SBS	Chr1	3900084	G-A	Homo	UTR_5_PRIME
SBS	Chr1	8632954	G-A	HET	UTR_3_PRIME
SBS	Chr10	18620450	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g34884
SBS	Chr10	18957454	C-T	HET	INTERGENIC
SBS	Chr10	5254886	A-G	Homo	INTERGENIC
SBS	Chr10	8297950	A-C	HET	INTRON
SBS	Chr11	14814379	A-T	Homo	INTERGENIC
SBS	Chr11	19580986	A-T	HET	INTRON
SBS	Chr12	16280865	T-C	HET	INTERGENIC
SBS	Chr2	24374419	C-T	HET	UTR_3_PRIME
SBS	Chr2	28988	G-A	HET	INTRON
SBS	Chr2	30667831	G-A	HET	INTERGENIC
SBS	Chr2	507548	G-A	HET	INTERGENIC
SBS	Chr2	9453377	C-T	Homo	INTERGENIC
SBS	Chr3	11420891	A-C	HET	INTERGENIC
SBS	Chr3	21001531	C-T	Homo	INTERGENIC
SBS	Chr3	27300782	C-T	HET	UTR_3_PRIME
SBS	Chr3	29807554	T-A	Homo	INTERGENIC
SBS	Chr4	10910902	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	11625780	G-T	HET	INTERGENIC
SBS	Chr4	26808686	G-A	HET	INTERGENIC
SBS	Chr4	28089926	T-C	HET	INTERGENIC
SBS	Chr4	9546690	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g17450
SBS	Chr5	1013002	G-A	HET	INTERGENIC
SBS	Chr5	1670852	T-C	HET	INTERGENIC
SBS	Chr5	17596868	G-A	HET	INTRON
SBS	Chr5	25149113	C-G	HET	INTERGENIC
SBS	Chr6	12279497	A-G	HET	INTERGENIC
SBS	Chr6	14763860	T-A	HET	INTERGENIC
SBS	Chr6	5446741	T-C	HET	INTERGENIC
SBS	Chr6	7524373	G-C	HET	INTERGENIC
SBS	Chr6	8973000	T-C	HET	INTERGENIC
SBS	Chr7	17514189	C-A	Homo	UTR_5_PRIME
SBS	Chr7	4366236	A-T	HET	INTERGENIC
SBS	Chr7	5990810	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g10940
SBS	Chr8	12612786	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	17313096	C-T	HET	INTERGENIC
SBS	Chr9	11953996	A-T	Homo	INTERGENIC
SBS	Chr9	6192690	C-A	HET	INTERGENIC
SBS	Chr9	8086073	C-T	HET	INTERGENIC

Deletions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1042097	1042106	9
Deletion	Chr1	1234649	1234650	1
Deletion	Chr6	2239700	2239714	14
Deletion	Chr6	4103401	4103402	1
Deletion	Chr1	4217027	4217048	21	LOC_Os01g08520
Deletion	Chr12	4667678	4667682	4
Deletion	Chr7	6258001	6336000	78000	12
Deletion	Chr6	6428913	6428915	2
Deletion	Chr10	6801128	6801130	2
Deletion	Chr3	7320214	7320216	2
Deletion	Chr11	9976795	9976799	4	LOC_Os11g17830
Deletion	Chr9	10067628	10067650	22
Deletion	Chr1	10357303	10357305	2
Deletion	Chr6	10573694	10573706	12
Deletion	Chr4	13747540	13747541	1
Deletion	Chr9	13968214	13968215	1
Deletion	Chr1	13970799	13970801	2
Deletion	Chr6	14154247	14154254	7
Deletion	Chr3	15929005	15929010	5
Deletion	Chr1	18864597	18864604	7
Deletion	Chr5	19903526	19903527	1
Deletion	Chr4	21204466	21204467	1
Deletion	Chr9	22806563	22806569	6	2
Deletion	Chr1	24595039	24595048	9	LOC_Os01g43110
Deletion	Chr7	25289859	25289862	3	2
Deletion	Chr5	27435403	27435409	6
Deletion	Chr5	27637908	27637963	55
Deletion	Chr1	28618166	28618188	22
Deletion	Chr1	28974591	28974595	4
Deletion	Chr5	29103569	29103571	2
Deletion	Chr6	29122458	29122459	1	LOC_Os06g48140
Deletion	Chr3	29396102	29396110	8
Deletion	Chr6	29470874	29470875	1
Deletion	Chr5	29754668	29754671	3	LOC_Os05g51830

Insertions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	17990186	17990187	2
Insertion	Chr1	18449959	18449959	1
Insertion	Chr1	23618734	23618778	45
Insertion	Chr1	30567313	30567314	2
Insertion	Chr10	1482413	1482414	2
Insertion	Chr11	4866726	4866727	2	LOC_Os11g09140
Insertion	Chr11	9458234	9458234	1
Insertion	Chr12	2331702	2331708	7
Insertion	Chr2	34777101	34777101	1	LOC_Os02g56730
Insertion	Chr4	25622967	25622967	1
Insertion	Chr5	23234059	23234059	1
Insertion	Chr5	53071	53071	1
Insertion	Chr7	4014182	4014183	2
Insertion	Chr9	13580981	13580983	3	LOC_Os09g22510

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	9354748	9359919	LOC_Os10g18400
Inversion	Chr11	14118773	14508023	LOC_Os11g24780
Inversion	Chr11	14118798	14507983	LOC_Os11g24780

No Translocation

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