Search Nipponbare

Mutant Information

Mutant Name	FN1537-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1537-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 45

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1926552	C-A	HET	INTERGENIC
SBS	Chr1	22158485	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g39370
SBS	Chr1	2661195	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g05570
SBS	Chr1	38649481	G-T	HET	INTERGENIC
SBS	Chr1	38657749	C-T	HET	INTERGENIC
SBS	Chr1	4985646	A-G	HET	INTERGENIC
SBS	Chr1	9534481	C-T	HET	INTRON
SBS	Chr10	20519626	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g38402
SBS	Chr10	797022	G-A	HET	INTRON
SBS	Chr11	11292595	C-T	Homo	STOP_GAINED	LOC_Os11g19590
SBS	Chr11	11933705	C-A	Homo	INTERGENIC
SBS	Chr11	16620160	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g28730
SBS	Chr11	16620161	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g28730
SBS	Chr11	18589469	C-A	Homo	INTERGENIC
SBS	Chr11	26298561	G-A	Homo	INTERGENIC
SBS	Chr11	341418	T-A	HET	UTR_5_PRIME
SBS	Chr12	11599392	A-G	HET	INTERGENIC
SBS	Chr12	15353133	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g26310
SBS	Chr12	22227870	G-A	Homo	INTERGENIC
SBS	Chr12	2832304	A-T	Homo	INTERGENIC
SBS	Chr12	4853612	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g09260
SBS	Chr2	1192660	G-C	Homo	INTERGENIC
SBS	Chr2	13502023	T-C	HET	INTRON
SBS	Chr2	22671834	C-T	HET	INTERGENIC
SBS	Chr2	28902792	G-A	Homo	INTERGENIC
SBS	Chr3	119979	C-T	HET	INTERGENIC
SBS	Chr3	15267826	C-T	HET	INTERGENIC
SBS	Chr3	23616277	A-T	HET	UTR_3_PRIME
SBS	Chr3	29567279	C-T	HET	INTERGENIC
SBS	Chr3	35253185	G-A	HET	SYNONYMOUS_CODING
SBS	Chr3	9569509	A-G	HET	INTERGENIC
SBS	Chr3	9813894	C-T	HET	INTRON
SBS	Chr4	20076997	G-A	Homo	INTERGENIC
SBS	Chr5	6201314	A-T	HET	INTERGENIC
SBS	Chr5	6966098	G-A	HET	INTERGENIC
SBS	Chr6	20546556	G-A	Homo	INTERGENIC
SBS	Chr6	25994070	A-G	HET	INTRON
SBS	Chr6	27933880	C-T	Homo	INTERGENIC
SBS	Chr7	21889425	C-T	Homo	INTERGENIC
SBS	Chr7	3396541	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g06940
SBS	Chr7	5259964	T-C	HET	INTERGENIC
SBS	Chr8	17949713	G-A	HET	INTERGENIC
SBS	Chr8	6981724	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g11910
SBS	Chr9	3128637	C-G	HET	INTERGENIC
SBS	Chr9	7950153	T-C	Homo	INTERGENIC

Deletions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1941918	1941920	2	LOC_Os01g04350
Deletion	Chr12	3649302	3649303	1
Deletion	Chr3	6167704	6167711	7
Deletion	Chr8	6565272	6565289	17
Deletion	Chr10	8328910	8328911	1
Deletion	Chr6	10247645	10247646	1
Deletion	Chr1	10730362	10730364	2
Deletion	Chr1	11141217	11141218	1
Deletion	Chr8	11803673	11803677	4	LOC_Os08g19710
Deletion	Chr5	12773852	12773863	11	LOC_Os05g22490
Deletion	Chr10	12996711	12996713	2
Deletion	Chr5	13221905	13221908	3
Deletion	Chr7	14362925	14362926	1
Deletion	Chr2	16463751	16463803	52
Deletion	Chr1	17772494	17772505	11
Deletion	Chr9	18140443	18140444	1
Deletion	Chr6	21161361	21161362	1
Deletion	Chr3	24341702	24341714	12	LOC_Os03g43570
Deletion	Chr3	24603818	24603819	1
Deletion	Chr2	25714198	25714199	1
Deletion	Chr8	26847964	26847965	1
Deletion	Chr2	27312590	27312600	10
Deletion	Chr12	27374058	27374063	5
Deletion	Chr5	28513700	28513702	2
Deletion	Chr4	28781127	28781132	5
Deletion	Chr4	29402058	29402059	1
Deletion	Chr3	34211157	34211158	1
Deletion	Chr2	35233904	35233908	4	LOC_Os02g57500
Deletion	Chr2	35277013	35277020	7	LOC_Os02g57600
Deletion	Chr1	38289371	38289372	1
Deletion	Chr1	38900216	38900234	18
Deletion	Chr1	42517568	42517569	1

Insertions: 13

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	11574409	11574442	34
Insertion	Chr1	16405035	16405035	1
Insertion	Chr1	30600695	30600695	1
Insertion	Chr10	20706353	20706368	16
Insertion	Chr11	24526967	24526968	2
Insertion	Chr11	4889975	4889976	2
Insertion	Chr4	19320101	19320102	2
Insertion	Chr4	4064667	4064669	3
Insertion	Chr4	6686356	6686379	24
Insertion	Chr7	20433143	20433186	44
Insertion	Chr7	26596738	26596739	2
Insertion	Chr7	9811635	9811635	1
Insertion	Chr9	22060412	22060412	1

No Inversion

No Translocation

Main menu

You are here

Search Nipponbare