Search Results

Mutant Information

Mutant Name	FN1541-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1541-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22511530	G-A	Homo	INTERGENIC
SBS	Chr1	23827064	C-A	Homo	INTRON
SBS	Chr3	7641587	C-T	Homo	INTRON
SBS	Chr3	16142843	C-T	Homo	INTERGENIC
SBS	Chr3	24160224	C-T	HET	INTERGENIC
SBS	Chr3	26407093	G-A	HET	INTERGENIC
SBS	Chr3	36350638	A-T	HET	INTRON
SBS	Chr4	23956039	A-T	HET	INTRON
SBS	Chr4	26386450	G-C	HET	INTERGENIC
SBS	Chr5	25080659	G-T	Homo	INTERGENIC
SBS	Chr7	25545636	G-A	HET	INTERGENIC
SBS	Chr8	503670	G-A	HET	INTERGENIC
SBS	Chr8	6377471	G-A	Homo	INTERGENIC
SBS	Chr8	7076823	G-A	Homo	INTERGENIC
SBS	Chr8	13839330	G-A	Homo	INTERGENIC
SBS	Chr8	27075645	G-A	HET	INTERGENIC
SBS	Chr8	27943503	A-T	Homo	INTRON
SBS	Chr9	2189299	G-A	Homo	INTERGENIC
SBS	Chr9	3376232	C-A	Homo	INTERGENIC
SBS	Chr10	885719	C-T	HET	INTRON
SBS	Chr10	1842477	G-C	HET	SYNONYMOUS_CODING
SBS	Chr10	8033174	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g15250
SBS	Chr11	16467384	G-A	Homo	INTERGENIC
SBS	Chr11	24910820	T-A	Homo	INTERGENIC
SBS	Chr11	25595954	T-C	Homo	INTERGENIC
SBS	Chr12	9896578	T-A	HET	INTRON
SBS	Chr12	21916084	C-A	HET	INTERGENIC

Deletions: 50

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1312208	1312219	11
Deletion	Chr4	1882356	1882358	2
Deletion	Chr10	2319660	2330605	10945	LOC_Os10g04810
Deletion	Chr10	3425642	3425661	19
Deletion	Chr6	3673815	3673817	2
Deletion	Chr11	3881664	3881666	2
Deletion	Chr11	3881665	3881667	2
Deletion	Chr10	4104700	4104705	5
Deletion	Chr6	6081072	6081082	10
Deletion	Chr9	6207424	6207425	1
Deletion	Chr2	6530910	6530911	1
Deletion	Chr12	6627473	6627564	91
Deletion	Chr11	6915421	6915422	1
Deletion	Chr10	7505244	7505245	1
Deletion	Chr2	8973662	8973663	1
Deletion	Chr12	10293452	10293453	1
Deletion	Chr12	10612875	10612884	9
Deletion	Chr11	10844967	10844968	1
Deletion	Chr1	11268215	11268219	4
Deletion	Chr5	11347624	11347626	2
Deletion	Chr12	11856301	11856302	1
Deletion	Chr7	12177312	12177313	1
Deletion	Chr12	12221941	12221947	6	LOC_Os12g21734
Deletion	Chr7	12227862	12256223	28361
Deletion	Chr12	12487882	12487889	7
Deletion	Chr12	12494142	12509483	15341	2
Deletion	Chr10	12752663	12752665	2
Deletion	Chr8	13355259	13355263	4
Deletion	Chr11	14213465	14213466	1
Deletion	Chr7	14905403	14905413	10
Deletion	Chr7	18305838	18305839	1
Deletion	Chr2	19065100	19065122	22
Deletion	Chr8	19119670	19119676	6	LOC_Os08g30970
Deletion	Chr12	19598429	19598430	1
Deletion	Chr2	20778670	20778687	17
Deletion	Chr8	20953281	20953282	1	LOC_Os08g33560
Deletion	Chr4	22505150	22505196	46
Deletion	Chr2	22891487	22891516	29
Deletion	Chr6	23944963	23945000	37
Deletion	Chr12	25964225	25964226	1
Deletion	Chr12	26541131	26541132	1
Deletion	Chr4	27274503	27274505	2
Deletion	Chr4	27746370	27746371	1
Deletion	Chr4	28192117	28192125	8	LOC_Os04g47530
Deletion	Chr4	29360375	29360400	25
Deletion	Chr4	29465623	29494558	28935	6
Deletion	Chr4	30404776	30405960	1184	LOC_Os04g51340
Deletion	Chr1	31040553	31040584	31
Deletion	Chr4	31426665	31426667	2
Deletion	Chr3	34795586	34795598	12

Insertions: 14

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr6	13454925	13454927	3
Insertion	Chr1	17694568	17694568	1
Insertion	Chr1	34902139	34902142	4
Insertion	Chr2	29064672	29064672	1
Insertion	Chr3	10230716	10230716	1
Insertion	Chr4	529422	529464	43
Insertion	Chr4	23931004	23931044	41
Insertion	Chr5	7539901	7539901	1
Insertion	Chr5	15791923	15791924	2
Insertion	Chr6	9763365	9763365	1
Insertion	Chr6	18663246	18663246	1
Insertion	Chr6	21411955	21411956	2
Insertion	Chr9	5756084	5756092	9
Insertion	Chr9	8061449	8061449	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	8091563	8501183
Inversion	Chr7	15278713	17812182	LOC_Os07g26510
Inversion	Chr7	15278790	17812187	LOC_Os07g26510

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	12494150	Chr1	12724105	LOC_Os01g22620
Translocation	Chr12	12506911	Chr1	12724091	LOC_Os01g22620
Translocation	Chr12	12506913	Chr3	34705298	LOC_Os03g61080
Translocation	Chr12	12509481	Chr3	34705249	LOC_Os03g61080
Translocation	Chr6	14068405	Chr4	23938460
Translocation	Chr9	22372279	Chr3	34870347	LOC_Os09g38960
Translocation	Chr4	30404805	Chr1	28933706
Translocation	Chr4	30405949	Chr1	28933668	LOC_Os04g51340

Main menu

You are here

Search Results