Search Results

Mutant Information

Mutant Name	FN1547-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1547-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18984717	G-A	Homo	INTRON
SBS	Chr1	22747252	C-T	HET	INTERGENIC
SBS	Chr1	33643847	C-T	HET	INTRON
SBS	Chr2	21646131	G-T	HET	INTERGENIC
SBS	Chr3	19022829	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g33250
SBS	Chr4	131807	A-G	Homo	INTERGENIC
SBS	Chr4	10093070	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g18244
SBS	Chr4	10093071	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	26718709	A-T	HET	INTRON
SBS	Chr4	29124785	G-A	HET	UTR_3_PRIME
SBS	Chr4	35194317	C-T	HET	INTERGENIC
SBS	Chr5	6214605	T-C	HET	INTERGENIC
SBS	Chr5	6400652	T-A	Homo	INTERGENIC
SBS	Chr5	13809362	C-T	Homo	INTERGENIC
SBS	Chr5	16083960	G-A	Homo	INTERGENIC
SBS	Chr5	22236915	A-G	Homo	INTERGENIC
SBS	Chr6	8858858	A-C	HET	INTRON
SBS	Chr6	26059527	A-C	Homo	INTERGENIC
SBS	Chr7	15535486	A-G	HET	INTERGENIC
SBS	Chr8	12707145	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g21300
SBS	Chr9	5489195	G-T	Homo	INTRON
SBS	Chr9	12421838	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr9	13345015	G-C	Homo	SYNONYMOUS_CODING
SBS	Chr12	4391215	A-G	HET	SPLICE_SITE_REGION
SBS	Chr12	13468623	C-T	Homo	INTERGENIC
SBS	Chr12	22863377	C-T	HET	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	2089945	2089946	1
Deletion	Chr3	2338830	2338840	10
Deletion	Chr11	3948001	4275000	327000	44
Deletion	Chr2	4353113	4353115	2
Deletion	Chr4	5535810	5535814	4
Deletion	Chr5	6007892	6007936	44
Deletion	Chr12	6148699	6148715	16
Deletion	Chr10	6909020	6909028	8
Deletion	Chr7	6948209	6948215	6
Deletion	Chr2	7965472	7965481	9
Deletion	Chr4	10647635	10647636	1
Deletion	Chr3	12539593	12539596	3	LOC_Os03g21914
Deletion	Chr8	13677719	13677729	10
Deletion	Chr3	14524570	14524641	71
Deletion	Chr1	15701638	15701639	1
Deletion	Chr7	16273984	16273989	5
Deletion	Chr11	17663987	17663988	1
Deletion	Chr6	18871581	18871582	1
Deletion	Chr2	20454934	20454935	1
Deletion	Chr11	21378682	21378700	18
Deletion	Chr7	21625925	21625926	1
Deletion	Chr2	23605183	23605193	10
Deletion	Chr4	24046799	24046807	8	LOC_Os04g40460
Deletion	Chr4	24966486	24966487	1	LOC_Os04g42174
Deletion	Chr1	25936552	25936553	1
Deletion	Chr3	26164337	26164342	5
Deletion	Chr1	34267069	34267070	1
Deletion	Chr1	34698217	34698218	1

Insertions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	20418513	20418514	2
Insertion	Chr12	1678690	1678690	1	LOC_Os12g04030
Insertion	Chr1	19488156	19488161	6
Insertion	Chr1	22747258	22747259	2
Insertion	Chr2	33662626	33662626	1
Insertion	Chr3	8283041	8283041	1
Insertion	Chr3	20862116	20862157	42
Insertion	Chr4	11872892	11872892	1
Insertion	Chr4	20142273	20142274	2
Insertion	Chr5	25434287	25434330	44
Insertion	Chr5	25434299	25434342	44
Insertion	Chr6	18274974	18274974	1
Insertion	Chr6	18534540	18534543	4
Insertion	Chr6	31125907	31125907	1
Insertion	Chr12	17132961	17132962	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	3634431	3948444	LOC_Os11g07230
Inversion	Chr2	7963232	8285189
Inversion	Chr2	7965223	9225996
Inversion	Chr2	8285208	8538578	LOC_Os02g15270
Inversion	Chr2	34497101	35151981	LOC_Os02g56354

No Translocation

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr2	7459624	7965213	505589

Main menu