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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	36864959	C-A	HET
SBS	Chr10	11112229	G-T	Homo
SBS	Chr10	11112230	A-T	Homo
SBS	Chr10	17762673	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g33680
SBS	Chr10	5994912	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g10830
SBS	Chr2	16695843	A-G	HET
SBS	Chr2	28633238	A-G	Homo
SBS	Chr2	533743	C-T	Homo
SBS	Chr2	5621033	G-A	Homo
SBS	Chr2	9017589	A-C	HET
SBS	Chr3	12716948	C-A	HET
SBS	Chr3	30842275	G-A	HET
SBS	Chr3	3268638	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g06510
SBS	Chr4	24944748	C-G	HET
SBS	Chr4	4591859	G-A	Homo
SBS	Chr5	8799907	A-G	Homo
SBS	Chr6	11084304	G-A	HET
SBS	Chr6	15181722	A-G	HET
SBS	Chr6	25053167	T-A	HET
SBS	Chr6	25053168	T-A	HET
SBS	Chr6	28059040	G-A	HET
SBS	Chr6	5789572	T-C	HET
SBS	Chr7	16686784	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g28510
SBS	Chr8	16927514	T-C	Homo	START_LOST	LOC_Os08g27790
SBS	Chr8	20469216	A-G	Homo
SBS	Chr8	27063218	G-A	HET
SBS	Chr9	15830749	G-A	HET
SBS	Chr9	5215558	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g09670
SBS	Chr9	5997905	G-A	Homo
SBS	Chr9	5997906	C-T	Homo
SBS	Chr9	8672209	C-T	Homo
SBS	Chr9	8672210	C-T	Homo	STOP_GAINED	LOC_Os09g14620

Deletions: 41

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	480762	480763	1
Deletion	Chr5	1564874	1564884	10
Deletion	Chr1	2019001	2037000	17999	3
Deletion	Chr11	2390001	2412000	21999	LOC_Os11g05380
Deletion	Chr6	3706001	3721000	14999	2
Deletion	Chr6	4060614	4060621	7
Deletion	Chr8	4205001	4266000	60999	10
Deletion	Chr9	4587001	4603000	15999	2
Deletion	Chr7	4765001	4810000	44999	7
Deletion	Chr2	5005001	5018000	12999	LOC_Os02g09730
Deletion	Chr8	5910928	5910938	10	LOC_Os08g10190
Deletion	Chr9	5932770	5932779	9
Deletion	Chr9	6321001	6369000	47999	7
Deletion	Chr2	6333331	6333332	1
Deletion	Chr10	7116559	7116562	3
Deletion	Chr10	7766001	7785000	18999	7
Deletion	Chr12	9278001	9294000	15999	4
Deletion	Chr1	9382197	9382198	1
Deletion	Chr10	9792773	9792776	3
Deletion	Chr11	10862814	10862818	4
Deletion	Chr8	11178088	11179083	995	LOC_Os08g18730
Deletion	Chr5	12550001	12577000	26999	2
Deletion	Chr12	12750001	12770000	19999	LOC_Os12g22600
Deletion	Chr12	12920001	12952000	31999	4
Deletion	Chr9	15170001	15202000	31999	3
Deletion	Chr2	15442153	15442154	1
Deletion	Chr10	16383001	16416000	32999	4
Deletion	Chr12	16667842	16667845	3
Deletion	Chr5	16791001	16813000	21999	LOC_Os05g28650
Deletion	Chr5	17023001	17047000	23999	LOC_Os05g29040
Deletion	Chr9	17710001	17729000	18999
Deletion	Chr2	20406461	20406484	23
Deletion	Chr6	21019001	21033000	13999	LOC_Os06g35990
Deletion	Chr9	21971001	21989000	17999	2
Deletion	Chr12	22829315	22829316	1
Deletion	Chr8	24158590	24158592	2	LOC_Os08g38130
Deletion	Chr3	24667001	24693000	25999	LOC_Os03g43960
Deletion	Chr12	24882844	24882849	5
Deletion	Chr6	27099001	27115000	15999	LOC_Os06g44860
Deletion	Chr2	32029286	32029293	7
Deletion	Chr1	35830526	35830528	2

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	2257186	2257186	1
Insertion	Chr3	17243800	17243800	1
Insertion	Chr5	19193910	19193911	2
Insertion	Chr5	1996884	1996885	2
Insertion	Chr6	25261685	25261687	3

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	1885772	1943612
Inversion	Chr1	1885803	1943635
Inversion	Chr6	9327150	9327436	LOC_Os06g16350
Inversion	Chr7	18266889	18805750	2
Inversion	Chr7	18266892	18805751	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr6	13891313	Chr3	23252557
Translocation	Chr6	22337528	Chr3	30491781
Translocation	Chr12	25908088	Chr8	23687029

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