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Mutant Information

Mutant Name	FN1549-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1549-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8426231	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g15020
SBS	Chr1	29191046	C-A	HET	INTERGENIC
SBS	Chr1	35223220	G-T	HET	INTERGENIC
SBS	Chr1	43196110	A-T	HET	INTERGENIC
SBS	Chr2	30468127	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g49850
SBS	Chr2	35222143	A-G	HET	UTR_3_PRIME
SBS	Chr2	35533675	A-T	HET	INTERGENIC
SBS	Chr3	24714852	A-C	HET	INTERGENIC
SBS	Chr4	10439718	T-A	HET	INTRON
SBS	Chr5	6450756	C-T	Homo	INTRON
SBS	Chr5	19237453	A-T	HET	INTRON
SBS	Chr5	21972921	A-G	HET	INTERGENIC
SBS	Chr6	1171966	T-C	HET	INTERGENIC
SBS	Chr6	2216350	G-A	Homo	INTERGENIC
SBS	Chr6	27599958	C-T	Homo	INTERGENIC
SBS	Chr7	1835275	G-C	HET	INTRON
SBS	Chr7	28122215	C-A	HET	INTRON
SBS	Chr7	28122220	C-A	HET	INTRON
SBS	Chr8	12696041	T-C	HET	INTERGENIC
SBS	Chr9	5620683	A-C	HET	INTERGENIC
SBS	Chr10	4927335	G-C	Homo	INTERGENIC
SBS	Chr11	18084954	G-T	Homo	INTERGENIC
SBS	Chr11	25589777	A-T	Homo	INTERGENIC
SBS	Chr12	9904304	A-T	Homo	INTERGENIC
SBS	Chr12	9904305	G-T	Homo	INTERGENIC
SBS	Chr12	25393253	C-T	Homo	INTRON
SBS	Chr12	26396582	T-C	HET	INTERGENIC

Deletions: 33

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	327238	327239	1
Deletion	Chr12	702000	702001	1
Deletion	Chr3	736012	736013	1
Deletion	Chr5	907265	907266	1
Deletion	Chr2	2061683	2061695	12
Deletion	Chr4	2251327	2251332	5
Deletion	Chr2	3536991	3537001	10
Deletion	Chr4	4962714	4962727	13
Deletion	Chr10	5234255	5234260	5	LOC_Os10g09680
Deletion	Chr6	6030924	6030925	1
Deletion	Chr1	6442784	6442785	1
Deletion	Chr11	6460383	6460384	1
Deletion	Chr8	8140747	8140755	8
Deletion	Chr11	9100392	9100397	5
Deletion	Chr11	12639267	12639268	1
Deletion	Chr4	13726107	13726108	1	LOC_Os04g24020
Deletion	Chr8	14789001	14875000	86000	12
Deletion	Chr4	16453045	16453047	2
Deletion	Chr5	21280811	21280812	1
Deletion	Chr11	22562387	22562389	2	LOC_Os11g38030
Deletion	Chr2	22728873	22728878	5
Deletion	Chr1	23467001	23509000	42000	8
Deletion	Chr11	24838616	24838623	7
Deletion	Chr7	24915260	24915267	7	2
Deletion	Chr3	25063165	25063172	7	LOC_Os03g44530
Deletion	Chr4	25910345	25910346	1
Deletion	Chr4	27823441	27823443	2
Deletion	Chr1	30089588	30089589	1
Deletion	Chr2	30448361	30448381	20	2
Deletion	Chr4	31413139	31413143	4	LOC_Os04g52760
Deletion	Chr3	31582364	31582366	2
Deletion	Chr4	32111842	32111843	1
Deletion	Chr1	37704272	37704278	6

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	36410239	36410240	2
Insertion	Chr12	10662679	10662680	2
Insertion	Chr1	30476935	30476935	1
Insertion	Chr4	3191644	3191645	2
Insertion	Chr4	9449367	9449367	1
Insertion	Chr6	6992556	6992556	1	LOC_Os06g12790
Insertion	Chr9	22585868	22585868	1	LOC_Os09g39290
Insertion	Chr12	22116757	22116766	10

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	3713975	12461578

No Translocation

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