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Mutant Information

Mutant Name	FN1550-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1550-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	35312228	C-T	HET	INTRON
SBS	Chr1	36408456	G-A	HET	INTERGENIC
SBS	Chr1	39371894	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g67740
SBS	Chr10	16539600	C-T	HET	INTERGENIC
SBS	Chr10	8438413	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g16900
SBS	Chr11	10667584	G-A	HET	STOP_GAINED	LOC_Os11g18790
SBS	Chr11	12063977	C-A	HET	INTERGENIC
SBS	Chr11	393157	T-C	Homo	INTRON
SBS	Chr11	4849964	C-A	Homo	INTERGENIC
SBS	Chr12	11471423	T-C	HET	INTRON
SBS	Chr12	13679269	C-A	HET	INTERGENIC
SBS	Chr12	17378611	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g29320
SBS	Chr12	22806205	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	16408712	G-A	HET	INTERGENIC
SBS	Chr2	21078786	C-T	HET	INTERGENIC
SBS	Chr2	27983486	A-T	HET	INTERGENIC
SBS	Chr2	29646484	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g48410
SBS	Chr2	32880981	A-C	HET	INTERGENIC
SBS	Chr2	7286339	C-T	HET	INTERGENIC
SBS	Chr3	11603252	G-A	HET	UTR_5_PRIME
SBS	Chr4	16663725	G-A	HET	INTERGENIC
SBS	Chr4	21049491	G-A	Homo	INTERGENIC
SBS	Chr4	21049492	G-A	Homo	INTERGENIC
SBS	Chr4	22614247	G-A	Homo	INTRON
SBS	Chr5	15309631	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g26320
SBS	Chr7	16433170	A-C	Homo	INTERGENIC
SBS	Chr7	6866923	C-A	Homo	INTERGENIC
SBS	Chr8	19625848	A-G	HET	INTERGENIC
SBS	Chr8	19625850	C-A	HET	INTERGENIC
SBS	Chr8	19832768	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g31980
SBS	Chr8	22788871	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g36160
SBS	Chr8	25776943	G-A	Homo	INTERGENIC
SBS	Chr9	2440497	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g04580
SBS	Chr9	4651459	C-T	Homo	INTRON
SBS	Chr9	9236679	G-C	HET	INTERGENIC

Deletions: 42

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	393551	393552	1
Deletion	Chr10	2319862	2320587	725
Deletion	Chr8	3624004	3624032	28
Deletion	Chr4	3700245	3700247	2
Deletion	Chr2	5814046	5814048	2
Deletion	Chr10	6836715	6836724	9
Deletion	Chr9	7952883	7952884	1	LOC_Os09g13640
Deletion	Chr5	9450945	9450950	5
Deletion	Chr2	9800866	9800867	1
Deletion	Chr2	11032681	11032686	5	LOC_Os02g18900
Deletion	Chr6	11128728	11128746	18
Deletion	Chr8	11745943	11745944	1
Deletion	Chr7	12141986	12148998	7012
Deletion	Chr9	12922577	12922580	3
Deletion	Chr6	13007787	13007788	1
Deletion	Chr12	13487224	13506109	18885	3
Deletion	Chr5	13734572	13734575	3	LOC_Os05g23880
Deletion	Chr9	13830163	13830172	9
Deletion	Chr1	14162625	14162650	25
Deletion	Chr1	14211967	14211977	10
Deletion	Chr8	14618293	14618294	1
Deletion	Chr3	14774797	14774799	2
Deletion	Chr6	15445780	15445781	1
Deletion	Chr12	15550345	15553275	2930	LOC_Os12g26580
Deletion	Chr12	15640999	15641016	17
Deletion	Chr11	15881111	15881112	1
Deletion	Chr10	19145474	19145501	27
Deletion	Chr8	19626010	19626018	8
Deletion	Chr5	19903389	19903393	4
Deletion	Chr3	20209024	20209029	5
Deletion	Chr10	21166040	21166041	1	LOC_Os10g39600
Deletion	Chr5	22280348	22280352	4
Deletion	Chr2	22661406	22661408	2
Deletion	Chr12	25469460	25469462	2
Deletion	Chr12	25804412	25804414	2	LOC_Os12g41680
Deletion	Chr3	28136521	28136522	1
Deletion	Chr2	28224678	28224682	4
Deletion	Chr3	29154006	29154007	1
Deletion	Chr4	29449891	29449892	1
Deletion	Chr2	34882612	34882626	14
Deletion	Chr4	35137140	35137141	1
Deletion	Chr1	42284294	42284295	1

Insertions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	11334810	11334814	5
Insertion	Chr1	9464647	9464652	6
Insertion	Chr10	15018748	15018763	16
Insertion	Chr12	17378613	17378614	2	LOC_Os12g29320
Insertion	Chr12	26365521	26365523	3	LOC_Os12g42420
Insertion	Chr12	8068857	8068860	4
Insertion	Chr2	15996016	15996016	1
Insertion	Chr2	17766807	17766808	2
Insertion	Chr2	19293462	19293463	2
Insertion	Chr2	28070136	28070180	45
Insertion	Chr3	557982	557982	1
Insertion	Chr4	17505261	17505284	24	LOC_Os04g29440
Insertion	Chr4	35137127	35137129	3
Insertion	Chr5	26262172	26262172	1
Insertion	Chr6	10493040	10493041	2
Insertion	Chr7	18784510	18784510	1
Insertion	Chr8	16701441	16701442	2
Insertion	Chr8	18575295	18575349	55	LOC_Os08g30220
Insertion	Chr8	23611468	23611469	2
Insertion	Chr8	3872176	3872179	4

No Inversion

No Translocation

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