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Mutant Information

Mutant Name	FN1551-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1551-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect
SBS	Chr1	26418162	G-T	Homo	INTERGENIC
SBS	Chr1	41839370	G-A	Homo	INTERGENIC
SBS	Chr10	513764	G-A	HET	INTERGENIC
SBS	Chr11	11194737	C-A	HET	INTRON
SBS	Chr11	12046509	A-C	HET	INTERGENIC
SBS	Chr11	7867663	A-G	HET	INTERGENIC
SBS	Chr11	9594711	T-C	HET	INTERGENIC
SBS	Chr12	19527811	C-T	HET	INTERGENIC
SBS	Chr12	20292481	T-G	HET	INTERGENIC
SBS	Chr2	26081932	C-T	HET	INTRON
SBS	Chr3	13481247	A-G	HET	INTERGENIC
SBS	Chr3	23415382	T-C	Homo	INTERGENIC
SBS	Chr4	11200759	C-A	Homo	INTERGENIC
SBS	Chr5	16589382	G-A	Homo	INTERGENIC
SBS	Chr5	3565866	A-G	Homo	INTRON
SBS	Chr6	1383553	G-C	HET	INTERGENIC
SBS	Chr6	19521731	A-G	HET	INTRON
SBS	Chr6	27098496	G-T	HET	INTERGENIC
SBS	Chr6	6398250	A-G	HET	INTERGENIC
SBS	Chr6	995786	C-T	HET	INTERGENIC
SBS	Chr7	12461055	G-A	HET	INTERGENIC
SBS	Chr7	17387811	T-C	HET	INTERGENIC
SBS	Chr7	25862254	T-A	HET	INTERGENIC
SBS	Chr7	26959939	C-T	HET	SYNONYMOUS_CODING

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	191838	191843	5
Deletion	Chr4	1776527	1776551	24	LOC_Os04g03884
Deletion	Chr10	2050873	2050879	6
Deletion	Chr3	2432849	2432858	9
Deletion	Chr12	3194635	3194636	1
Deletion	Chr12	3649710	3649712	2
Deletion	Chr8	4754239	4754240	1
Deletion	Chr11	5936597	5936599	2
Deletion	Chr12	7401501	7401502	1
Deletion	Chr4	7974665	7974666	1	LOC_Os04g14220
Deletion	Chr7	8127521	8127522	1	LOC_Os07g14260
Deletion	Chr11	8808760	8808764	4
Deletion	Chr6	9860730	9860800	70
Deletion	Chr4	10148608	10148615	7
Deletion	Chr8	11744511	11744513	2
Deletion	Chr1	18131330	18131333	3
Deletion	Chr8	18784825	18784827	2
Deletion	Chr3	22644001	22683000	39000	4
Deletion	Chr5	22802053	22802068	15
Deletion	Chr12	24260128	24260135	7
Deletion	Chr2	24421505	24421507	2
Deletion	Chr2	24446766	24446767	1	LOC_Os02g40360
Deletion	Chr5	25233555	25233563	8
Deletion	Chr11	25615006	25615008	2
Deletion	Chr3	26131464	26131470	6	LOC_Os03g46220
Deletion	Chr6	28278244	28278258	14
Deletion	Chr2	35159606	35159620	14
Deletion	Chr1	36894340	36894352	12

Insertions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	15100693	15100694	2
Insertion	Chr1	23427472	23427511	40
Insertion	Chr10	3975304	3975305	2
Insertion	Chr10	7169942	7169942	1
Insertion	Chr11	28405212	28405213	2
Insertion	Chr12	17950338	17950411	74
Insertion	Chr2	16474085	16474090	6
Insertion	Chr2	34444415	34444418	4	LOC_Os02g56280
Insertion	Chr4	11076830	11076830	1
Insertion	Chr4	13446911	13446912	2
Insertion	Chr4	26456788	26456790	3
Insertion	Chr4	2929523	2929551	29
Insertion	Chr4	6676793	6676793	1
Insertion	Chr5	169904	169906	3
Insertion	Chr5	23570803	23570806	4
Insertion	Chr6	2675791	2675791	1	LOC_Os06g05850
Insertion	Chr6	31241380	31241381	2
Insertion	Chr7	24742603	24742603	1
Insertion	Chr7	25554899	25554900	2	LOC_Os07g42680
Insertion	Chr8	14704763	14704823	61
Insertion	Chr8	2519079	2519079	1
Insertion	Chr8	28166745	28166746	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	12687810	12785097

No Translocation

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