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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16948631	C-T	Homo	INTERGENIC
SBS	Chr1	25803339	G-A	Homo	INTERGENIC
SBS	Chr2	12680934	C-A	HET	INTERGENIC
SBS	Chr2	24942021	C-T	HET	INTRON
SBS	Chr2	30785368	C-T	HET	INTERGENIC
SBS	Chr3	1384813	C-T	Homo	INTRON
SBS	Chr3	10343657	G-T	Homo	INTERGENIC
SBS	Chr3	17158642	G-T	Homo	INTERGENIC
SBS	Chr4	600031	C-T	HET	UTR_5_PRIME
SBS	Chr4	3628621	T-A	HET	INTERGENIC
SBS	Chr4	26631641	T-C	HET	INTERGENIC
SBS	Chr4	26722658	C-A	HET	INTERGENIC
SBS	Chr5	7154107	G-A	HET	INTERGENIC
SBS	Chr5	15725829	T-G	Homo	INTERGENIC
SBS	Chr7	1158170	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	1180561	G-C	Homo	INTERGENIC
SBS	Chr8	8774924	G-T	Homo	INTERGENIC
SBS	Chr9	19238103	G-A	Homo	INTRON
SBS	Chr9	19238104	C-A	Homo	INTRON
SBS	Chr10	2010528	T-A	Homo	INTERGENIC
SBS	Chr11	945415	C-A	HET	INTERGENIC
SBS	Chr11	6295651	C-T	HET	INTERGENIC
SBS	Chr11	18907426	C-T	HET	INTERGENIC
SBS	Chr11	19384431	A-T	HET	INTERGENIC
SBS	Chr12	11938861	G-A	HET	INTERGENIC
SBS	Chr12	17219219	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g29070

Deletions: 43

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	600005	600015	10	LOC_Os04g01960
Deletion	Chr3	645888	645889	1
Deletion	Chr8	1183001	1220000	37000	5
Deletion	Chr12	2056798	2067093	10295	2
Deletion	Chr4	2650300	2650307	7
Deletion	Chr10	2890734	2890742	8
Deletion	Chr12	2906249	2906254	5
Deletion	Chr2	3084119	3084120	1
Deletion	Chr10	3244482	3244512	30
Deletion	Chr12	4126526	4126541	15
Deletion	Chr6	4165705	4165709	4
Deletion	Chr4	4569039	4569040	1	LOC_Os04g08470
Deletion	Chr5	5399575	5399576	1
Deletion	Chr11	5813408	5813410	2
Deletion	Chr7	7096262	7096263	1
Deletion	Chr5	7189492	7189502	10
Deletion	Chr5	7207574	7207578	4
Deletion	Chr12	7588384	7588545	161
Deletion	Chr1	7693919	7693921	2	LOC_Os01g13740
Deletion	Chr12	8263885	8263886	1
Deletion	Chr3	10090494	10090501	7	LOC_Os03g18080
Deletion	Chr5	12041253	12041262	9	LOC_Os05g20510
Deletion	Chr4	12587350	12587351	1
Deletion	Chr1	13254024	13254026	2
Deletion	Chr2	13344261	13344273	12
Deletion	Chr11	13346591	13346607	16	LOC_Os11g23180
Deletion	Chr10	13792240	13792242	2
Deletion	Chr2	17906217	17906219	2	LOC_Os02g30140
Deletion	Chr10	17922061	17922063	2
Deletion	Chr12	18166281	18166288	7	LOC_Os12g30290
Deletion	Chr9	19746082	19746084	2
Deletion	Chr11	21442898	21442899	1
Deletion	Chr1	22116364	22116365	1
Deletion	Chr8	22791122	22791123	1
Deletion	Chr11	25450671	25452539	1868	LOC_Os11g42250
Deletion	Chr6	26526729	26526790	61
Deletion	Chr4	26896651	26896653	2
Deletion	Chr8	27227251	27247970	20719	3
Deletion	Chr11	27659415	27659425	10
Deletion	Chr1	27754348	27754356	8
Deletion	Chr4	29311579	29311581	2
Deletion	Chr3	29455391	29455400	9	LOC_Os03g51479
Deletion	Chr2	31365862	31365866	4

Insertions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	4367303	4367304	2
Insertion	Chr1	36381547	36381548	2	LOC_Os01g62810
Insertion	Chr2	29554654	29554655	2
Insertion	Chr8	14287654	14287655	2
Insertion	Chr11	20080915	20080916	2
Insertion	Chr12	26071999	26071999	1
Insertion	Chr1	36464409	36464410	2
Insertion	Chr2	17883880	17883910	31
Insertion	Chr2	21110653	21110654	2
Insertion	Chr4	16969354	16969392	39
Insertion	Chr4	27353442	27353447	6
Insertion	Chr5	13135471	13135471	1
Insertion	Chr6	1477903	1477908	6
Insertion	Chr6	14561015	14561015	1
Insertion	Chr7	7957228	7957229	2
Insertion	Chr7	12084865	12084865	1
Insertion	Chr9	8815514	8815518	5	LOC_Os09g14800
Insertion	Chr10	2292864	2292864	1
Insertion	Chr10	3255073	3255073	1
Insertion	Chr11	14231151	14231172	22	LOC_Os11g24990

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	7349728	8145780	2
Inversion	Chr5	7349846	8145817	2
Inversion	Chr7	21969565	22107888	LOC_Os07g36920
Inversion	Chr11	25452534	25578892	LOC_Os11g42250

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	2939551	Chr7	21969606	LOC_Os11g06170
Translocation	Chr11	25579712	Chr9	20565249
Translocation	Chr11	25579992	Chr9	19944477	LOC_Os09g33780

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