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Mutant Information

Mutant Name	FN1555-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1555-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	33683822	G-T	HET	INTERGENIC
SBS	Chr3	8513627	A-T	HET	INTRON
SBS	Chr3	8513629	A-T	HET	INTRON
SBS	Chr3	33110282	G-A	Homo	INTERGENIC
SBS	Chr4	1433380	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g03340
SBS	Chr4	8924601	A-C	Homo	INTRON
SBS	Chr4	16787705	T-C	Homo	INTERGENIC
SBS	Chr5	694593	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g02210
SBS	Chr5	694594	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g02210
SBS	Chr5	29219994	A-G	HET	UTR_3_PRIME
SBS	Chr6	30874087	A-T	HET	INTRON
SBS	Chr8	10423765	T-C	HET	SYNONYMOUS_CODING
SBS	Chr8	20444446	G-A	Homo	INTERGENIC
SBS	Chr9	3582208	C-T	HET	INTRON
SBS	Chr10	10043080	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g20020
SBS	Chr11	18542035	G-A	Homo	INTERGENIC
SBS	Chr11	27837020	G-A	HET	INTERGENIC
SBS	Chr11	28717706	T-C	HET	INTERGENIC

Deletions: 39

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	251055	251056	1	LOC_Os10g01410
Deletion	Chr7	1548144	1548148	4
Deletion	Chr4	1921718	1921719	1	LOC_Os04g04150
Deletion	Chr10	1934223	1934224	1
Deletion	Chr9	2230676	2230680	4
Deletion	Chr2	2499414	2499416	2
Deletion	Chr9	3913705	3913715	10
Deletion	Chr9	4594938	4594941	3
Deletion	Chr3	6758001	7144000	386000	55
Deletion	Chr5	7673903	7673906	3
Deletion	Chr4	8104863	8104864	1
Deletion	Chr6	8610178	8610187	9
Deletion	Chr9	8642909	8642923	14
Deletion	Chr6	10944228	10944233	5
Deletion	Chr6	10952747	10952752	5
Deletion	Chr7	11923863	11923866	3
Deletion	Chr3	11977096	11977100	4
Deletion	Chr4	12161090	12161133	43
Deletion	Chr5	12167085	12167090	5
Deletion	Chr10	13314199	13314201	2
Deletion	Chr11	13598132	13598134	2
Deletion	Chr9	15112363	15112373	10
Deletion	Chr2	15276899	15276907	8
Deletion	Chr12	16222265	16222266	1
Deletion	Chr11	16696819	16696820	1
Deletion	Chr4	17007062	17007075	13
Deletion	Chr10	17169087	17169094	7
Deletion	Chr12	18217628	18217630	2	LOC_Os12g30340
Deletion	Chr6	19843685	19843690	5
Deletion	Chr6	20623468	20630300	6832	2
Deletion	Chr5	21991040	21991043	3	LOC_Os05g37580
Deletion	Chr1	23372819	23372820	1
Deletion	Chr6	24632762	24632769	7
Deletion	Chr5	27164608	27164609	1
Deletion	Chr6	27460085	27460097	12
Deletion	Chr6	27668184	27668189	5	LOC_Os06g45690
Deletion	Chr5	27994238	27994244	6
Deletion	Chr1	32768335	32768336	1
Deletion	Chr1	34671716	34671717	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	3029054	3029055	2
Insertion	Chr4	27475230	27475256	27
Insertion	Chr6	23550006	23550006	1
Insertion	Chr10	19750229	19750241	13
Insertion	Chr11	6162725	6162732	8

No Inversion

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	18767198	Chr1	8069326
Translocation	Chr5	20129036	Chr4	33013027	LOC_Os05g34070
Translocation	Chr6	30896782	Chr3	15605906	LOC_Os03g27230
Translocation	Chr6	30904878	Chr3	15605885	2

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