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Mutant Information

Mutant Name	FN1566-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1566-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22137288	T-C	HET	INTERGENIC
SBS	Chr1	2670148	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g05600
SBS	Chr1	32174517	C-T	Homo	INTRON
SBS	Chr1	40075121	G-T	HET	INTERGENIC
SBS	Chr1	5763631	C-T	HET	SPLICE_SITE_REGION
SBS	Chr1	7112249	T-C	Homo	INTERGENIC
SBS	Chr10	366765	C-T	Homo	UTR_5_PRIME
SBS	Chr10	5619500	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g10214
SBS	Chr10	8505746	A-G	HET	INTERGENIC
SBS	Chr11	14432307	A-C	HET	INTERGENIC
SBS	Chr11	14432308	T-A	HET	INTERGENIC
SBS	Chr11	20773513	G-A	Homo	INTERGENIC
SBS	Chr11	2487616	C-G	HET	INTERGENIC
SBS	Chr12	24242495	C-T	Homo	INTERGENIC
SBS	Chr3	14235013	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g24950
SBS	Chr3	25816885	A-C	Homo	INTERGENIC
SBS	Chr3	30649587	C-T	HET	INTERGENIC
SBS	Chr5	26328177	C-T	Homo	INTERGENIC
SBS	Chr5	7699442	C-T	HET	INTERGENIC
SBS	Chr5	7699444	G-A	HET	INTERGENIC
SBS	Chr5	7747956	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g13940
SBS	Chr5	7773186	C-T	HET	INTERGENIC
SBS	Chr6	1087913	C-G	HET	INTERGENIC
SBS	Chr6	15066808	A-G	Homo	INTRON
SBS	Chr6	24354419	T-A	HET	INTERGENIC
SBS	Chr6	25904990	G-A	HET	INTERGENIC
SBS	Chr6	27967439	G-T	Homo	INTRON
SBS	Chr6	547998	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g01972
SBS	Chr7	10088171	C-T	HET	INTERGENIC
SBS	Chr7	1065828	A-G	HET	INTERGENIC
SBS	Chr7	18965796	A-C	HET	INTERGENIC
SBS	Chr7	25677377	T-A	Homo	INTERGENIC
SBS	Chr9	12081052	T-C	Homo	INTRON
SBS	Chr9	15514178	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g25870

Deletions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1383156	1383158	2	LOC_Os11g03570
Deletion	Chr10	1561050	1561056	6
Deletion	Chr9	1592426	1592437	11
Deletion	Chr5	2046737	2046739	2
Deletion	Chr3	3515653	3515687	34	LOC_Os03g06930
Deletion	Chr11	5674416	5674417	1
Deletion	Chr5	6613721	6613722	1
Deletion	Chr2	8026843	8026844	1
Deletion	Chr2	8027984	8027989	5	LOC_Os02g14560
Deletion	Chr10	8644405	8644418	13
Deletion	Chr7	9438733	9438742	9
Deletion	Chr12	10688067	10688086	19
Deletion	Chr3	11758987	11759001	14
Deletion	Chr6	11975337	11975348	11
Deletion	Chr5	13725937	13725948	11	LOC_Os05g23870
Deletion	Chr3	13781809	13781814	5
Deletion	Chr6	13843176	13843185	9
Deletion	Chr9	14055892	14055895	3
Deletion	Chr11	14385001	14429000	44000	6
Deletion	Chr9	15145204	15145293	89	LOC_Os09g25300
Deletion	Chr6	15356331	15356334	3
Deletion	Chr11	15414623	15414624	1
Deletion	Chr3	17767447	17767450	3	LOC_Os03g31200
Deletion	Chr4	18014313	18025680	11367	3
Deletion	Chr10	21383953	21383955	2
Deletion	Chr4	22007697	22007698	1
Deletion	Chr3	22468508	22468573	65
Deletion	Chr6	22513739	22513740	1	LOC_Os06g38070
Deletion	Chr5	29074293	29074294	1
Deletion	Chr1	35674541	35674550	9	LOC_Os01g61660
Deletion	Chr1	37140312	37140314	2
Deletion	Chr1	42028750	42028755	5

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	4481051	4481055	5	LOC_Os10g08290
Insertion	Chr12	458792	458793	2
Insertion	Chr4	9530145	9530145	1
Insertion	Chr6	10109622	10109622	1
Insertion	Chr7	20205844	20205846	3
Insertion	Chr7	29146364	29146367	4
Insertion	Chr8	3234051	3234051	1
Insertion	Chr9	12945888	12945888	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	2718724	2951864	LOC_Os03g05880

No Translocation

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