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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5364970	T-C	HET	INTERGENIC
SBS	Chr1	9084020	A-C	Homo	INTERGENIC
SBS	Chr1	14149775	T-A	HET	INTERGENIC
SBS	Chr1	26792150	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g46950
SBS	Chr1	32335278	G-A	HET	INTRON
SBS	Chr1	36423308	C-T	Homo	INTERGENIC
SBS	Chr2	9716265	G-T	HET	INTERGENIC
SBS	Chr2	11041086	A-T	HET	INTERGENIC
SBS	Chr2	12223511	G-A	HET	INTERGENIC
SBS	Chr2	14042927	T-A	HET	STOP_GAINED	LOC_Os02g24230
SBS	Chr2	33766950	T-C	Homo	INTERGENIC
SBS	Chr3	1858419	A-T	Homo	INTERGENIC
SBS	Chr3	9475940	T-C	HET	INTERGENIC
SBS	Chr3	10265833	T-A	HET	INTRON
SBS	Chr3	22989017	A-G	HET	INTERGENIC
SBS	Chr3	25747445	A-G	Homo	INTRON
SBS	Chr5	10263761	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g17840
SBS	Chr6	4532809	A-G	Homo	INTERGENIC
SBS	Chr7	2356905	T-C	HET	INTERGENIC
SBS	Chr7	5491073	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g10220
SBS	Chr7	8768911	A-T	HET	INTRON
SBS	Chr8	9614618	C-T	HET	STOP_GAINED	LOC_Os08g15830
SBS	Chr8	15985283	C-T	HET	INTRON
SBS	Chr8	16141389	C-T	HET	INTRON
SBS	Chr8	16142178	G-A	Homo	SPLICE_SITE_REGION
SBS	Chr9	4239018	G-A	HET	INTRON
SBS	Chr9	5731802	G-T	Homo	INTERGENIC
SBS	Chr10	1820324	A-T	HET	INTERGENIC
SBS	Chr10	2066447	G-T	HET	INTERGENIC
SBS	Chr10	2484291	G-A	HET	INTRON
SBS	Chr10	10043080	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g20020
SBS	Chr11	17833607	G-T	Homo	INTERGENIC
SBS	Chr11	18949700	T-C	Homo	INTERGENIC
SBS	Chr12	14980045	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g25830

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	4118059	4118060	1
Deletion	Chr10	4586821	4586822	1
Deletion	Chr10	4913981	4913982	1
Deletion	Chr9	6658819	6658820	1
Deletion	Chr6	7220499	7220500	1
Deletion	Chr12	7329412	7329413	1
Deletion	Chr4	7978559	7978560	1
Deletion	Chr11	8194440	8194441	1
Deletion	Chr10	9876252	9876254	2
Deletion	Chr8	11377104	11377109	5
Deletion	Chr12	12051331	12051332	1
Deletion	Chr11	13011947	13011955	8
Deletion	Chr8	14218219	14218236	17	LOC_Os08g23480
Deletion	Chr8	14891261	14891262	1
Deletion	Chr4	17471541	17471550	9
Deletion	Chr7	19774622	19774623	1
Deletion	Chr12	21009930	21009931	1
Deletion	Chr1	23103354	23103364	10
Deletion	Chr3	23513678	23513685	7
Deletion	Chr11	23963378	23963390	12
Deletion	Chr3	26820029	26820036	7
Deletion	Chr5	28229700	28229701	1
Deletion	Chr2	29687523	29687524	1
Deletion	Chr1	32543954	32543969	15
Deletion	Chr3	33875862	33875867	5
Deletion	Chr1	34523434	34523435	1

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	30276415	30276416	2
Insertion	Chr1	4634006	4634030	25
Insertion	Chr1	7284691	7284698	8
Insertion	Chr1	27933585	27933586	2
Insertion	Chr4	8607096	8607136	41
Insertion	Chr5	17503641	17503682	42
Insertion	Chr6	25885779	25885786	8
Insertion	Chr8	16866911	16866912	2
Insertion	Chr11	7072743	7072743	1	LOC_Os11g12590
Insertion	Chr12	5665594	5665594	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	8487738	8741108
Inversion	Chr7	8487751	8602892
Inversion	Chr12	8542550	13372020	LOC_Os12g23590
Inversion	Chr5	14921597	18954040	LOC_Os05g25660
Inversion	Chr5	14933263	18954034
Inversion	Chr7	18675147	19334772

No Translocation

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