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Mutant Information

Mutant Name	FN1570-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1570-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26336723	C-T	HET	INTERGENIC
SBS	Chr1	37902187	A-C	Homo	INTRON
SBS	Chr1	9626936	A-G	HET	INTERGENIC
SBS	Chr10	12749678	T-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g24790
SBS	Chr11	13162805	C-G	HET	INTERGENIC
SBS	Chr12	21611404	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr3	13676058	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g24090
SBS	Chr3	14389761	A-T	Homo	INTERGENIC
SBS	Chr3	26484048	T-G	Homo	INTERGENIC
SBS	Chr3	35866589	A-T	HET	INTRON
SBS	Chr4	23590517	C-T	HET	INTERGENIC
SBS	Chr5	13310234	A-G	Homo	INTRON
SBS	Chr5	14050171	A-G	Homo	INTERGENIC
SBS	Chr5	22363836	G-A	HET	INTERGENIC
SBS	Chr6	1145605	A-C	HET	INTERGENIC
SBS	Chr6	14541663	T-C	HET	INTERGENIC
SBS	Chr6	1583413	C-T	HET	INTRON
SBS	Chr6	20311286	G-A	HET	SPLICE_SITE_REGION
SBS	Chr6	6256093	C-T	HET	SYNONYMOUS_CODING
SBS	Chr7	19622384	G-A	HET	INTERGENIC
SBS	Chr9	21398825	A-G	Homo	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	783697	783715	18
Deletion	Chr6	1024155	1024157	2
Deletion	Chr6	2523674	2523679	5
Deletion	Chr1	3784093	3784094	1	LOC_Os01g07860
Deletion	Chr4	4238105	4238117	12	LOC_Os04g07944
Deletion	Chr8	5298339	5298343	4	LOC_Os08g09140
Deletion	Chr2	6259474	6259475	1
Deletion	Chr6	8319980	8320032	52	LOC_Os06g14750
Deletion	Chr3	10290164	10290178	14
Deletion	Chr4	10353725	10353760	35
Deletion	Chr5	10844441	10844449	8
Deletion	Chr5	16870922	16870927	5
Deletion	Chr6	17475807	17475817	10
Deletion	Chr7	18140009	18140010	1	LOC_Os07g30650
Deletion	Chr6	20445076	20445079	3
Deletion	Chr7	20655746	20655747	1
Deletion	Chr4	25331654	25331655	1
Deletion	Chr8	27765575	27765580	5
Deletion	Chr3	27993371	27993372	1
Deletion	Chr1	27996900	27996901	1	LOC_Os01g48800
Deletion	Chr3	33716738	33716739	1

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	14394082	14394143	62
Insertion	Chr1	1825332	1825333	2
Insertion	Chr11	12087258	12087289	32
Insertion	Chr12	9415641	9415641	1	LOC_Os12g16440
Insertion	Chr3	13360586	13360589	4
Insertion	Chr3	28548899	28548900	2
Insertion	Chr4	16982430	16982430	1
Insertion	Chr7	24822952	24822952	1
Insertion	Chr8	15363160	15363160	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	2298604	2376575
Inversion	Chr9	14008101	14222701	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	26719204	Chr1	37458021	2
Translocation	Chr4	26722602	Chr1	37458018	2

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