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Mutant Information

Mutant Name	FN1571-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1571-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1126813	G-T	HET	INTERGENIC
SBS	Chr1	13916769	G-C	Homo	INTERGENIC
SBS	Chr1	14487801	A-G	Homo	INTERGENIC
SBS	Chr1	1831793	C-T	HET	INTERGENIC
SBS	Chr1	3008245	C-T	HET	INTERGENIC
SBS	Chr1	31955079	A-G	HET	INTERGENIC
SBS	Chr10	11287859	A-G	Homo	INTERGENIC
SBS	Chr10	15189448	T-G	HET	INTERGENIC
SBS	Chr10	15189449	A-T	HET	INTERGENIC
SBS	Chr10	16668669	C-T	HET	INTRON
SBS	Chr10	18395524	C-T	HET	INTERGENIC
SBS	Chr12	26409520	A-G	HET	INTERGENIC
SBS	Chr2	17522702	G-T	HET	INTERGENIC
SBS	Chr2	17974736	G-T	HET	INTERGENIC
SBS	Chr2	25214045	A-G	HET	INTRON
SBS	Chr3	10005734	C-T	HET	INTERGENIC
SBS	Chr3	14189801	G-A	HET	INTRON
SBS	Chr3	18495590	G-A	HET	INTERGENIC
SBS	Chr3	1906691	C-T	Homo	INTERGENIC
SBS	Chr3	2281893	T-C	Homo	INTERGENIC
SBS	Chr3	27481391	G-A	HET	INTERGENIC
SBS	Chr3	27481392	C-A	HET	INTERGENIC
SBS	Chr3	6877268	T-A	HET	INTERGENIC
SBS	Chr3	9997044	A-G	HET	INTRON
SBS	Chr4	20434368	C-A	HET	INTERGENIC
SBS	Chr4	20434369	C-T	HET	INTERGENIC
SBS	Chr4	20434373	C-T	HET	INTERGENIC
SBS	Chr4	2245520	G-A	HET	INTERGENIC
SBS	Chr4	30170413	C-T	HET	INTRON
SBS	Chr5	10457148	G-A	HET	INTERGENIC
SBS	Chr5	12922910	C-T	Homo	INTERGENIC
SBS	Chr5	325170	T-C	HET	INTERGENIC
SBS	Chr9	4086803	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g07960

Deletions: 42

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	238229	238231	2
Deletion	Chr11	1363303	1363324	21
Deletion	Chr11	1809034	1809035	1	LOC_Os11g04350
Deletion	Chr8	2175032	2175039	7	LOC_Os08g04440
Deletion	Chr12	2808835	2808869	34
Deletion	Chr6	7348372	7348375	3
Deletion	Chr11	7349882	7349883	1
Deletion	Chr12	7495363	7495371	8
Deletion	Chr4	8190398	8190399	1
Deletion	Chr10	8231859	8231860	1
Deletion	Chr1	8321270	8321281	11
Deletion	Chr2	8632496	8632499	3
Deletion	Chr10	9161227	9161229	2
Deletion	Chr3	9989469	9989470	1
Deletion	Chr2	10221075	10221081	6
Deletion	Chr7	10665390	10665391	1
Deletion	Chr7	12223446	12235672	12226
Deletion	Chr3	13018985	13018986	1
Deletion	Chr3	13475318	13475321	3
Deletion	Chr9	14827526	14827528	2
Deletion	Chr1	15661808	15661819	11
Deletion	Chr5	16224113	16224114	1
Deletion	Chr3	16351704	16351705	1	LOC_Os03g28370
Deletion	Chr12	16727760	16727761	1
Deletion	Chr5	18612328	18612334	6
Deletion	Chr3	18631767	18631799	32
Deletion	Chr12	18751387	18751405	18
Deletion	Chr8	19727688	19727689	1
Deletion	Chr3	20002203	20002227	24
Deletion	Chr9	20040241	20040253	12	LOC_Os09g33950
Deletion	Chr1	20429513	20429531	18	LOC_Os01g36772
Deletion	Chr5	21031185	21031256	71
Deletion	Chr6	21047017	21047020	3
Deletion	Chr1	21562417	21562418	1
Deletion	Chr8	24156679	24156680	1
Deletion	Chr3	25261134	25261135	1
Deletion	Chr4	27261513	27261518	5	LOC_Os04g46020
Deletion	Chr8	27930768	27930773	5	LOC_Os08g44380
Deletion	Chr1	31932468	31932469	1
Deletion	Chr1	31955030	31955033	3
Deletion	Chr4	34591195	34591202	7
Deletion	Chr1	37689189	37689198	9

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	24831832	24831872	41
Insertion	Chr1	40693359	40693359	1
Insertion	Chr1	42113299	42113308	10
Insertion	Chr1	42511399	42511399	1
Insertion	Chr10	2189216	2189217	2
Insertion	Chr10	3648138	3648138	1
Insertion	Chr11	12087255	12087307	53
Insertion	Chr11	21832437	21832438	2
Insertion	Chr12	19957888	19957893	6
Insertion	Chr2	16780837	16780883	47
Insertion	Chr2	18016290	18016290	1
Insertion	Chr8	9535639	9535644	6

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	10255782	30025390	LOC_Os03g18300
Inversion	Chr6	14486314	14970366	LOC_Os06g24660

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	27344056	Chr11	28939329	2

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