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Mutant Information

Mutant Name	FN1575-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1575-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10992626	C-T	HET	INTERGENIC
SBS	Chr1	18453235	C-G	HET	INTERGENIC
SBS	Chr1	38353614	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g66090
SBS	Chr11	25094094	G-T	Homo	INTERGENIC
SBS	Chr11	25094095	C-T	Homo	INTERGENIC
SBS	Chr11	9417622	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr2	27264907	G-A	Homo	INTERGENIC
SBS	Chr2	29865132	G-A	HET	STOP_GAINED	LOC_Os02g48790
SBS	Chr2	32226240	G-A	HET	INTERGENIC
SBS	Chr4	12108066	G-C	Homo	INTERGENIC
SBS	Chr4	1666018	G-A	HET	INTERGENIC
SBS	Chr4	20146553	G-A	HET	INTERGENIC
SBS	Chr4	22349435	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	32824114	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g55210
SBS	Chr5	25595904	C-G	HET	INTERGENIC
SBS	Chr6	2613565	T-A	HET	INTERGENIC
SBS	Chr7	44915	C-T	HET	INTERGENIC
SBS	Chr7	4846649	C-T	HET	INTERGENIC
SBS	Chr8	16174569	G-A	HET	INTERGENIC
SBS	Chr8	6927103	C-G	HET	INTERGENIC
SBS	Chr9	12079768	C-A	HET	INTERGENIC
SBS	Chr9	16144705	G-A	HET	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	624426	624454	28
Deletion	Chr9	1581957	1581958	1	LOC_Os09g03290
Deletion	Chr4	1773422	1773435	13	LOC_Os04g03880
Deletion	Chr5	2069130	2069136	6	LOC_Os05g04480
Deletion	Chr11	2766258	2766259	1
Deletion	Chr7	3869001	3918000	49000	12
Deletion	Chr7	5153119	5153120	1
Deletion	Chr7	6912625	6912632	7
Deletion	Chr5	7754056	7754057	1
Deletion	Chr1	8526979	8526980	1
Deletion	Chr1	8706266	8706267	1	LOC_Os01g15490
Deletion	Chr2	12697604	12697605	1
Deletion	Chr1	16089416	16089417	1
Deletion	Chr6	16103612	16103614	2
Deletion	Chr8	17602655	17602659	4	LOC_Os08g28770
Deletion	Chr7	18123415	18123476	61
Deletion	Chr4	18328089	18328106	17
Deletion	Chr4	18330333	18330335	2
Deletion	Chr12	19596446	19596619	173
Deletion	Chr11	19603564	19603566	2
Deletion	Chr7	23785039	23785041	2	LOC_Os07g39690
Deletion	Chr6	25186954	25186957	3
Deletion	Chr11	27081468	27081479	11	LOC_Os11g44750
Deletion	Chr1	27412603	27412613	10	LOC_Os01g47890
Deletion	Chr1	27903826	27903829	3	LOC_Os01g48670

Insertions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	18605246	18605305	60
Insertion	Chr12	10620869	10620870	2
Insertion	Chr12	19511362	19511363	2
Insertion	Chr12	22027865	22027882	18
Insertion	Chr12	8529734	8529734	1
Insertion	Chr2	11684315	11684349	35
Insertion	Chr2	18799856	18799899	44
Insertion	Chr4	3574542	3574543	2
Insertion	Chr6	10145093	10145147	55
Insertion	Chr6	13174715	13174715	1
Insertion	Chr6	25665733	25665733	1
Insertion	Chr8	11300734	11300735	2	LOC_Os08g18940
Insertion	Chr8	13320890	13320891	2
Insertion	Chr8	14565057	14565058	2
Insertion	Chr8	265665	265670	6

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	6454149	6754662	LOC_Os10g11680
Inversion	Chr1	16397655	18367737	LOC_Os01g29250
Inversion	Chr1	18353339	18367740	LOC_Os01g33300

No Translocation

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