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Mutant Information

Mutant Name	FN1583-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1583-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11085207	T-C	HET	INTERGENIC
SBS	Chr1	23460032	C-T	HET	INTERGENIC
SBS	Chr1	33906265	C-A	HET	INTERGENIC
SBS	Chr10	1012039	G-A	HET	INTRON
SBS	Chr10	158827	A-G	HET	INTERGENIC
SBS	Chr10	2864433	A-T	HET	UTR_5_PRIME
SBS	Chr10	9439978	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr12	16184264	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	24150566	G-A	Homo	INTERGENIC
SBS	Chr12	25845118	A-G	HET	INTERGENIC
SBS	Chr12	25845120	C-T	HET	INTERGENIC
SBS	Chr2	18105718	C-A	Homo	INTERGENIC
SBS	Chr2	18882209	G-T	Homo	INTERGENIC
SBS	Chr2	18882210	C-T	Homo	INTERGENIC
SBS	Chr3	13262240	C-T	HET	INTERGENIC
SBS	Chr3	14630782	C-T	HET	INTERGENIC
SBS	Chr3	18158332	T-G	HET	INTRON
SBS	Chr3	19279414	T-C	HET	INTRON
SBS	Chr4	23645942	T-C	Homo	INTERGENIC
SBS	Chr5	11765545	T-A	Homo	INTRON
SBS	Chr6	10430583	T-C	HET	INTERGENIC
SBS	Chr6	7566720	C-T	HET	SYNONYMOUS_CODING
SBS	Chr7	1848320	C-T	Homo	INTRON
SBS	Chr7	8025460	C-A	HET	STOP_GAINED	LOC_Os07g14070
SBS	Chr8	18429043	G-C	Homo	INTERGENIC
SBS	Chr8	27116643	T-A	HET	INTERGENIC
SBS	Chr9	2072771	T-A	HET	INTERGENIC
SBS	Chr9	2072772	G-A	HET	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	463514	463519	5
Deletion	Chr8	893166	893178	12	LOC_Os08g02330
Deletion	Chr6	3138296	3138298	2
Deletion	Chr4	3850834	3850840	6
Deletion	Chr10	4808929	4817846	8917
Deletion	Chr9	9970051	9970052	1
Deletion	Chr9	12046575	12046576	1
Deletion	Chr11	15940582	15940586	4
Deletion	Chr11	15949858	15950484	626
Deletion	Chr1	16191001	16225000	34000	9
Deletion	Chr12	18383197	18383200	3
Deletion	Chr9	19554462	19554463	1
Deletion	Chr12	19578278	19578282	4
Deletion	Chr3	21049418	21049420	2
Deletion	Chr4	21719918	21719931	13
Deletion	Chr3	23286922	23286925	3
Deletion	Chr3	23749512	23749514	2
Deletion	Chr6	25382233	25382234	1	LOC_Os06g42260
Deletion	Chr5	25750974	25750981	7
Deletion	Chr3	35086009	35086011	2	LOC_Os03g61890
Deletion	Chr1	37397765	37397768	3
Deletion	Chr1	38000695	38000699	4	LOC_Os01g65460

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	16194004	16194013	10
Insertion	Chr1	23724167	23724176	10
Insertion	Chr1	26649035	26649035	1
Insertion	Chr11	7091416	7091467	52
Insertion	Chr12	16229090	16229091	2
Insertion	Chr2	427839	427839	1
Insertion	Chr4	13826964	13827034	71
Insertion	Chr4	16503714	16503789	76
Insertion	Chr5	26862562	26862562	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	5772842	17587029
Inversion	Chr1	15682417	16191539	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	20165059	Chr7	18604903	LOC_Os10g37680
Translocation	Chr10	20165763	Chr7	18604905
Translocation	Chr8	22080283	Chr6	1069090

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