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Mutant Information

Mutant Name	FN1585-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1585-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 46

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14686085	G-T	HET	INTERGENIC
SBS	Chr1	14686087	A-G	HET	INTERGENIC
SBS	Chr1	38967295	G-A	Homo	INTERGENIC
SBS	Chr1	41650304	C-T	HET	INTERGENIC
SBS	Chr2	20806026	G-T	Homo	INTERGENIC
SBS	Chr2	24675030	C-T	Homo	INTERGENIC
SBS	Chr2	26513812	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g43920
SBS	Chr3	20053998	C-T	Homo	INTRON
SBS	Chr3	26000290	G-T	HET	UTR_5_PRIME
SBS	Chr3	28689874	T-C	HET	INTERGENIC
SBS	Chr3	32493392	C-G	HET	INTERGENIC
SBS	Chr4	3280551	G-A	HET	INTERGENIC
SBS	Chr4	6569160	A-T	HET	INTERGENIC
SBS	Chr4	16075881	C-T	HET	INTERGENIC
SBS	Chr5	12270422	C-A	HET	INTERGENIC
SBS	Chr5	13567176	T-C	HET	INTERGENIC
SBS	Chr5	22096465	C-A	Homo	INTERGENIC
SBS	Chr5	29875453	G-A	HET	INTERGENIC
SBS	Chr6	9026096	T-A	HET	INTERGENIC
SBS	Chr6	9153884	T-G	HET	INTERGENIC
SBS	Chr6	11532965	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g20110
SBS	Chr6	14000760	G-C	HET	INTERGENIC
SBS	Chr6	17666078	G-T	HET	INTERGENIC
SBS	Chr6	30125972	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr7	29143300	C-A	HET	INTERGENIC
SBS	Chr8	17760231	G-A	Homo	INTERGENIC
SBS	Chr8	25365288	C-T	HET	INTERGENIC
SBS	Chr8	25365289	C-T	HET	INTERGENIC
SBS	Chr8	26565449	A-C	HET	INTERGENIC
SBS	Chr9	3643453	A-G	HET	INTERGENIC
SBS	Chr9	14221750	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g23850
SBS	Chr9	18126651	G-A	HET	INTERGENIC
SBS	Chr9	22099738	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	22401126	A-T	HET	INTRON
SBS	Chr9	22559153	C-T	HET	INTERGENIC
SBS	Chr10	8054693	A-C	Homo	INTERGENIC
SBS	Chr10	19534526	T-C	Homo	INTRON
SBS	Chr11	7647331	T-A	Homo	INTRON
SBS	Chr11	7647333	C-A	Homo	INTRON
SBS	Chr11	10407373	C-A	Homo	INTERGENIC
SBS	Chr11	10845900	C-T	Homo	INTRON
SBS	Chr11	28776847	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	20210837	C-T	HET	INTERGENIC
SBS	Chr12	27383454	C-T	HET	INTERGENIC
SBS	Chr12	27383455	C-G	HET	INTERGENIC
SBS	Chr12	27383456	C-T	HET	INTERGENIC

Deletions: 33

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	2018705	2018706	1
Deletion	Chr12	4020543	4020548	5	LOC_Os12g07920
Deletion	Chr12	4020548	4020553	5	LOC_Os12g07920
Deletion	Chr12	5164720	5164721	1
Deletion	Chr12	5436871	5436872	1
Deletion	Chr6	5766072	5766073	1
Deletion	Chr8	6642809	6642813	4	LOC_Os08g11300
Deletion	Chr10	6974110	6997183	23073	4
Deletion	Chr4	7151188	7151195	7	LOC_Os04g12950
Deletion	Chr4	7416664	7416675	11	LOC_Os04g13340
Deletion	Chr11	8129190	8129191	1
Deletion	Chr4	9339902	9339903	1
Deletion	Chr9	11102775	11102777	2
Deletion	Chr3	11407763	11407764	1	LOC_Os03g20180
Deletion	Chr3	15610475	15610477	2
Deletion	Chr1	15880457	15880463	6
Deletion	Chr6	16353943	16353945	2	LOC_Os06g28730
Deletion	Chr6	16621723	16621724	1	LOC_Os06g29130
Deletion	Chr5	16914140	16914146	6
Deletion	Chr8	17447899	17447902	3
Deletion	Chr5	17579305	17579415	110
Deletion	Chr12	17810315	17810332	17
Deletion	Chr8	19332034	19332035	1
Deletion	Chr3	19681642	19681645	3
Deletion	Chr12	24002715	24002718	3
Deletion	Chr4	24069938	24069941	3	LOC_Os04g40520
Deletion	Chr8	24156679	24156680	1
Deletion	Chr7	24817579	24817582	3
Deletion	Chr1	24969290	24969301	11
Deletion	Chr11	25977001	26028000	51000	9
Deletion	Chr4	27234031	27234032	1
Deletion	Chr3	31272862	31272870	8
Deletion	Chr3	32277909	32277918	9

Insertions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	35365516	35365517	2
Insertion	Chr1	2998548	2998590	43
Insertion	Chr1	34660048	34660065	18
Insertion	Chr2	6051807	6051807	1
Insertion	Chr2	33777486	33777486	1	LOC_Os02g55134
Insertion	Chr3	1519	1594	76
Insertion	Chr3	3046306	3046309	4
Insertion	Chr3	24454434	24454463	30
Insertion	Chr4	12143919	12143960	42
Insertion	Chr5	6402287	6402290	4
Insertion	Chr5	23446401	23446408	8
Insertion	Chr7	8432326	8432326	1
Insertion	Chr8	19333744	19333794	51
Insertion	Chr8	21514216	21514216	1
Insertion	Chr9	21997598	21997598	1
Insertion	Chr11	25908858	25908863	6
Insertion	Chr12	599150	599163	14
Insertion	Chr12	24888127	24888146	20

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	124650	593639	2
Inversion	Chr10	8559867	11318198
Inversion	Chr10	8560114	11318203

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	2150822	Chr6	17994716	LOC_Os06g30930
Translocation	Chr11	2153623	Chr6	17994670	LOC_Os06g30930
Translocation	Chr8	3835356	Chr7	24482098
Translocation	Chr6	13890696	Chr5	12667341
Translocation	Chr11	17697612	Chr5	22429736
Translocation	Chr8	18080407	Chr6	8906189

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