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Mutant Information

Mutant Name	FN1586-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1586-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	34205579	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g59210
SBS	Chr2	18426197	T-C	Homo	INTERGENIC
SBS	Chr2	23621980	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g39110
SBS	Chr2	23621984	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	27636276	T-C	Homo	INTERGENIC
SBS	Chr3	34638863	C-G	Homo	INTERGENIC
SBS	Chr4	12849927	G-A	HET	INTERGENIC
SBS	Chr4	13132910	C-T	Homo	INTERGENIC
SBS	Chr4	14579533	C-T	HET	INTERGENIC
SBS	Chr4	21608677	A-T	HET	INTERGENIC
SBS	Chr4	27797511	A-T	Homo	INTRON
SBS	Chr6	4018278	C-T	HET	INTRON
SBS	Chr6	9790648	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g16890
SBS	Chr7	506126	C-G	HET	INTERGENIC
SBS	Chr7	7174848	T-C	HET	INTERGENIC
SBS	Chr7	14007907	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g24620
SBS	Chr8	1351271	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g03030
SBS	Chr8	9718387	T-C	HET	INTERGENIC
SBS	Chr8	13106947	A-T	HET	INTERGENIC
SBS	Chr8	15315065	G-A	HET	INTERGENIC
SBS	Chr8	23106305	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g36620
SBS	Chr9	14738867	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g24740
SBS	Chr10	294026	G-A	HET	INTERGENIC
SBS	Chr11	393436	T-A	HET	INTRON
SBS	Chr11	488269	C-T	HET	INTERGENIC
SBS	Chr11	23604662	C-T	HET	INTERGENIC
SBS	Chr12	1926211	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g04520
SBS	Chr12	17371484	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g29310
SBS	Chr12	25385639	A-T	HET	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	371492	371499	7
Deletion	Chr1	709445	709451	6
Deletion	Chr6	2882836	2882842	6
Deletion	Chr7	3042001	3105000	63000	9
Deletion	Chr7	3950282	3950283	1
Deletion	Chr8	6027700	6027706	6
Deletion	Chr12	6283737	6283738	1
Deletion	Chr12	7140688	7140693	5
Deletion	Chr7	8373950	8373954	4
Deletion	Chr12	13390241	13390242	1
Deletion	Chr3	13471240	13471247	7
Deletion	Chr2	13656529	13656531	2
Deletion	Chr1	14285900	14285905	5
Deletion	Chr8	14812001	14875000	63000	7
Deletion	Chr8	14816755	14816770	15
Deletion	Chr8	17267701	17267703	2
Deletion	Chr12	17569359	17569360	1
Deletion	Chr12	18435767	18435788	21
Deletion	Chr7	20542001	20607000	65000	9
Deletion	Chr1	21258678	21258679	1
Deletion	Chr4	21716808	21716809	1
Deletion	Chr2	27695966	27695968	2
Deletion	Chr1	29863655	29863656	1	LOC_Os01g51950
Deletion	Chr1	37894475	37894478	3	LOC_Os01g65320

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	27648495	27648495	1
Insertion	Chr1	29264799	29264800	2
Insertion	Chr2	17866036	17866037	2
Insertion	Chr3	8016683	8016692	10
Insertion	Chr3	18602236	18602303	68
Insertion	Chr5	25089466	25089481	16
Insertion	Chr6	11567144	11567145	2
Insertion	Chr8	6450798	6450798	1
Insertion	Chr8	27460396	27460397	2
Insertion	Chr11	27297176	27297179	4
Insertion	Chr12	14694336	14694347	12

No Inversion

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	4442139	Chr3	31311796	LOC_Os05g08150
Translocation	Chr5	4442420	Chr3	31311795	LOC_Os05g08150
Translocation	Chr11	21907918	Chr8	9057180	2

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