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Mutant Information

Mutant Name	FN1590-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1590-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 17

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	30948005	C-A	HET	INTERGENIC
SBS	Chr10	9020077	G-C	Homo	INTERGENIC
SBS	Chr11	20481087	G-A	HET	INTERGENIC
SBS	Chr11	20481088	T-A	HET	INTERGENIC
SBS	Chr12	11692276	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g20110
SBS	Chr12	19313299	C-T	Homo	INTERGENIC
SBS	Chr12	25059169	T-C	HET	INTRON
SBS	Chr2	17594977	G-A	HET	INTERGENIC
SBS	Chr2	22315536	T-G	Homo	INTERGENIC
SBS	Chr3	33899586	A-G	HET	UTR_3_PRIME
SBS	Chr4	30401417	G-C	HET	INTRON
SBS	Chr5	18308211	A-G	HET	INTERGENIC
SBS	Chr6	16595957	T-A	Homo	INTRON
SBS	Chr8	19263994	G-A	Homo	INTERGENIC
SBS	Chr8	21750557	C-T	Homo	INTERGENIC
SBS	Chr8	28107877	G-A	HET	INTERGENIC
SBS	Chr9	15379577	C-T	HET	INTERGENIC

Deletions: 36

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	447236	447242	6	LOC_Os11g01836
Deletion	Chr2	1395414	1395415	1	LOC_Os02g03420
Deletion	Chr8	1441092	1441093	1	LOC_Os08g03140
Deletion	Chr2	2446164	2446167	3
Deletion	Chr9	3062863	3062864	1
Deletion	Chr4	4101979	4102005	26
Deletion	Chr1	5642315	5642336	21
Deletion	Chr11	5721457	5721468	11
Deletion	Chr9	6759971	6759987	16
Deletion	Chr12	7807338	7807339	1	LOC_Os12g13810
Deletion	Chr3	8350160	8350178	18
Deletion	Chr4	8958498	8958502	4	LOC_Os04g16480
Deletion	Chr9	10321008	10321010	2
Deletion	Chr8	11189001	11231000	42000	9
Deletion	Chr5	12137245	12137253	8	LOC_Os05g20700
Deletion	Chr8	13236002	13236003	1
Deletion	Chr5	13389535	13389540	5	LOC_Os05g23430
Deletion	Chr8	13695349	13695354	5
Deletion	Chr7	18821394	18821397	3	LOC_Os07g31700
Deletion	Chr4	19148980	19148994	14	LOC_Os04g31971
Deletion	Chr8	20048150	20048154	4	LOC_Os08g32370
Deletion	Chr6	21503903	21522448	18545	3
Deletion	Chr6	21580025	21580038	13
Deletion	Chr8	22479002	22479005	3
Deletion	Chr10	23034293	23034295	2
Deletion	Chr3	23708104	23708109	5
Deletion	Chr3	23816357	23816359	2	LOC_Os03g42760
Deletion	Chr7	23945832	23945833	1
Deletion	Chr8	24342954	24342956	2
Deletion	Chr6	24816119	24816121	2	LOC_Os06g41390
Deletion	Chr2	27097510	27097514	4
Deletion	Chr7	29692569	29692571	2
Deletion	Chr6	29915734	29915735	1
Deletion	Chr4	30493983	30493984	1	LOC_Os04g51470
Deletion	Chr1	32813001	32860000	47000	8
Deletion	Chr1	41158600	41158605	5	LOC_Os01g71106

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	20422341	20422341	1
Insertion	Chr11	22360207	22360229	23
Insertion	Chr2	24310567	24310567	1
Insertion	Chr4	20394930	20394930	1	LOC_Os04g33680
Insertion	Chr6	23287977	23287977	1
Insertion	Chr6	29432069	29432070	2
Insertion	Chr7	11342964	11343014	51
Insertion	Chr8	20412977	20412978	2
Insertion	Chr8	22800889	22800889	1
Insertion	Chr8	2626621	2626624	4

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	1054102	9311991	LOC_Os04g17010
Inversion	Chr4	2692695	9311988	LOC_Os04g17010
Inversion	Chr1	38168586	38644949	LOC_Os01g66544
Inversion	Chr1	38168616	38644959	LOC_Os01g66544

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	6675393	Chr1	32812326
Translocation	Chr12	6679736	Chr3	7847583	LOC_Os12g12170
Translocation	Chr3	6787041	Chr1	14175981	LOC_Os03g12720

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