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Mutant Information

Mutant Name	FN1610-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1610-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6180108	A-G	HET	INTERGENIC
SBS	Chr1	7401094	A-C	HET	INTRON
SBS	Chr1	10696927	C-T	HET	INTERGENIC
SBS	Chr1	14709059	C-A	HET	SYNONYMOUS_CODING
SBS	Chr1	34483389	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g59620
SBS	Chr1	41178235	T-C	Homo	INTERGENIC
SBS	Chr2	1931633	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g04380
SBS	Chr2	2622349	A-C	HET	INTRON
SBS	Chr2	6520622	A-T	Homo	INTERGENIC
SBS	Chr2	31103862	G-C	HET	INTERGENIC
SBS	Chr3	6374528	A-C	HET	INTERGENIC
SBS	Chr3	16998640	G-A	HET	INTERGENIC
SBS	Chr3	28900364	G-A	HET	INTERGENIC
SBS	Chr3	28900365	G-A	HET	INTERGENIC
SBS	Chr3	35589201	C-T	HET	INTERGENIC
SBS	Chr5	8755189	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g15480
SBS	Chr5	21694181	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	21694182	C-T	HET	STOP_GAINED	LOC_Os05g37120
SBS	Chr5	24494094	C-T	HET	INTERGENIC
SBS	Chr5	24896861	A-T	HET	INTERGENIC
SBS	Chr6	24180715	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr7	3856976	T-C	HET	INTERGENIC
SBS	Chr7	13029351	A-G	HET	INTRON
SBS	Chr7	22710315	G-A	HET	INTERGENIC
SBS	Chr8	1056674	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g02560
SBS	Chr8	7516616	T-C	Homo	INTERGENIC
SBS	Chr8	19950223	T-A	HET	INTERGENIC
SBS	Chr9	5918410	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	7089383	C-T	HET	INTERGENIC
SBS	Chr9	14135354	C-T	HET	INTERGENIC
SBS	Chr9	18162875	C-T	HET	INTERGENIC
SBS	Chr9	22594118	G-A	HET	INTERGENIC
SBS	Chr10	1895170	G-A	Homo	INTERGENIC
SBS	Chr11	18720893	T-C	HET	INTERGENIC
SBS	Chr11	27791618	A-T	Homo	INTRON
SBS	Chr12	8988795	T-C	HET	INTRON
SBS	Chr12	14233560	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g24800

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	384872	384876	4
Deletion	Chr9	1924060	1924078	18
Deletion	Chr4	3011065	3011066	1
Deletion	Chr11	4505983	4505984	1
Deletion	Chr3	6372746	6372752	6	LOC_Os03g12140
Deletion	Chr7	10528398	10528399	1
Deletion	Chr10	10710556	10710560	4
Deletion	Chr6	10716561	10716572	11	LOC_Os06g18860
Deletion	Chr1	11075483	11075484	1
Deletion	Chr9	13056362	13056364	2
Deletion	Chr3	13414962	13414963	1
Deletion	Chr8	13517881	13517882	1
Deletion	Chr6	13632335	13632336	1
Deletion	Chr3	14905933	14905943	10
Deletion	Chr4	15637306	15666566	29260	LOC_Os04g26790
Deletion	Chr7	15779408	15779409	1
Deletion	Chr3	16018717	16018723	6	LOC_Os03g27880
Deletion	Chr1	16454057	16454066	9
Deletion	Chr4	20121862	20121863	1	LOC_Os04g33260
Deletion	Chr2	21121839	21121870	31
Deletion	Chr3	21957000	21957006	6
Deletion	Chr5	22730572	22730596	24	LOC_Os05g38730
Deletion	Chr9	22737770	22737815	45	LOC_Os09g39620
Deletion	Chr8	24651115	24651121	6
Deletion	Chr2	25427761	25427767	6
Deletion	Chr11	27703560	27703562	2
Deletion	Chr7	29548168	29548169	1	LOC_Os07g49330
Deletion	Chr4	31381926	31381939	13
Deletion	Chr3	33407445	33407457	12

Insertions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	8338880	8338881	2
Insertion	Chr7	24289012	24289013	2
Insertion	Chr1	48990	48990	1
Insertion	Chr1	7754757	7754757	1
Insertion	Chr1	41514524	41514524	1
Insertion	Chr3	30494350	30494350	1
Insertion	Chr4	16434830	16434835	6
Insertion	Chr4	23106402	23106402	1
Insertion	Chr5	6018131	6018131	1
Insertion	Chr5	27560817	27560820	4	LOC_Os05g48070
Insertion	Chr7	13461159	13461159	1
Insertion	Chr7	23389083	23389109	27
Insertion	Chr8	7862935	7862935	1
Insertion	Chr8	9212042	9212042	1
Insertion	Chr11	7308109	7308111	3
Insertion	Chr11	13994166	13994166	1
Insertion	Chr12	14481154	14481154	1
Insertion	Chr12	15024484	15024496	13

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	31543412	31833567	LOC_Os04g53460

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	2570542	Chr1	8218341
Translocation	Chr2	18066728	Chr1	8221598
Translocation	Chr10	18195122	Chr4	8855403	LOC_Os04g16300
Translocation	Chr8	25425880	Chr1	34371005

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