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Mutant Information

Mutant Name	FN1613-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1613-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 17

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16113764	G-A	HET	INTRON
SBS	Chr1	30320010	G-A	HET	INTERGENIC
SBS	Chr10	13713231	T-C	HET	SYNONYMOUS_CODING
SBS	Chr10	16900351	C-G	HET	INTERGENIC
SBS	Chr12	25363254	G-C	Homo	INTERGENIC
SBS	Chr2	5546345	C-T	HET	INTERGENIC
SBS	Chr3	17024290	G-A	HET	INTERGENIC
SBS	Chr4	10102565	T-C	HET	INTERGENIC
SBS	Chr4	4480948	A-G	HET	INTERGENIC
SBS	Chr5	1450048	C-T	Homo	INTERGENIC
SBS	Chr5	22577479	T-G	Homo	UTR_3_PRIME
SBS	Chr7	10284989	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g17420
SBS	Chr7	26435598	A-T	HET	INTERGENIC
SBS	Chr7	9619951	T-C	HET	INTRON
SBS	Chr8	4991451	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g08640
SBS	Chr8	9723265	T-A	HET	INTERGENIC
SBS	Chr9	21892711	G-A	Homo	SYNONYMOUS_CODING

Deletions: 37

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	403211	403217	6	LOC_Os02g01720
Deletion	Chr5	971649	971652	3
Deletion	Chr11	1594352	1594353	1
Deletion	Chr2	1723833	1723839	6
Deletion	Chr4	2891249	2891255	6	LOC_Os04g05650
Deletion	Chr3	4685183	4694825	9642	3
Deletion	Chr4	4686508	4686516	8
Deletion	Chr11	6460383	6460384	1
Deletion	Chr8	8412539	8412554	15
Deletion	Chr8	8413186	8413205	19
Deletion	Chr11	8603051	8603053	2
Deletion	Chr12	8623545	8623553	8	LOC_Os12g15110
Deletion	Chr3	9235801	9235802	1
Deletion	Chr7	9429228	9429240	12
Deletion	Chr4	9598814	9598823	9
Deletion	Chr9	9986907	9986916	9
Deletion	Chr7	13300925	13300931	6
Deletion	Chr8	13641745	13641747	2	LOC_Os08g22680
Deletion	Chr12	14972088	14972107	19
Deletion	Chr10	15361970	15362014	44
Deletion	Chr2	15721186	15721187	1
Deletion	Chr3	16316973	16316988	15
Deletion	Chr10	18367151	18367169	18	LOC_Os10g34430
Deletion	Chr7	18368744	18368746	2
Deletion	Chr3	18642464	18642486	22
Deletion	Chr2	18808716	18808717	1
Deletion	Chr6	19998231	19998235	4
Deletion	Chr2	21226001	21299000	73000	7
Deletion	Chr6	21290836	21290843	7
Deletion	Chr8	23806979	23806981	2
Deletion	Chr8	25413898	25413909	11
Deletion	Chr3	27861178	27861179	1
Deletion	Chr5	28811348	28811359	11
Deletion	Chr7	29270453	29270467	14
Deletion	Chr4	34734463	34734468	5
Deletion	Chr3	34835855	34835863	8
Deletion	Chr1	34848485	34848486	1

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	12079671	12079672	2
Insertion	Chr12	6734503	6734517	15
Insertion	Chr3	10275036	10275060	25	LOC_Os03g18330
Insertion	Chr3	459719	459719	1
Insertion	Chr4	3013970	3013971	2
Insertion	Chr7	4450318	4450318	1
Insertion	Chr8	22451380	22451381	2
Insertion	Chr8	26803078	26803080	3
Insertion	Chr8	3573900	3573903	4

No Inversion

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	6133341	Chr1	41519464	LOC_Os01g71630
Translocation	Chr12	11625109	Chr3	23147734
Translocation	Chr5	16306636	Chr3	4694819	2
Translocation	Chr5	16306641	Chr3	4685196	LOC_Os05g27950

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