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Mutant Information

Mutant Name	FN1614-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1614-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13233497	A-G	HET	INTRON
SBS	Chr1	41896095	G-T	HET	UTR_3_PRIME
SBS	Chr2	4926268	C-A	HET	INTERGENIC
SBS	Chr3	10078598	T-C	HET	INTERGENIC
SBS	Chr4	7694307	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr4	12039639	G-T	Homo	INTERGENIC
SBS	Chr4	24583998	A-T	Homo	INTRON
SBS	Chr5	6541612	A-G	HET	UTR_3_PRIME
SBS	Chr5	8273001	T-C	HET	INTERGENIC
SBS	Chr5	15109742	A-T	HET	INTERGENIC
SBS	Chr5	26174777	G-A	HET	INTERGENIC
SBS	Chr6	13061083	A-G	HET	INTERGENIC
SBS	Chr6	14237915	G-A	HET	INTERGENIC
SBS	Chr7	1427692	T-A	Homo	INTERGENIC
SBS	Chr7	11251124	C-A	HET	INTERGENIC
SBS	Chr7	11536855	G-C	HET	INTRON
SBS	Chr7	27488890	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g46060
SBS	Chr8	4412467	C-T	Homo	INTRON
SBS	Chr8	11833374	C-T	Homo	INTERGENIC
SBS	Chr8	11833375	T-C	Homo	INTERGENIC
SBS	Chr8	13654777	T-G	Homo	INTERGENIC
SBS	Chr9	20211682	C-T	Homo	INTERGENIC
SBS	Chr9	22748715	T-C	Homo	INTRON
SBS	Chr10	17113025	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g32680
SBS	Chr11	5998009	T-C	Homo	INTERGENIC
SBS	Chr11	14235749	G-T	Homo	INTERGENIC
SBS	Chr11	14869474	A-T	Homo	INTERGENIC
SBS	Chr11	24895442	T-C	HET	INTERGENIC
SBS	Chr12	978163	G-A	HET	INTERGENIC
SBS	Chr12	11693410	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g20110
SBS	Chr12	22764728	G-T	Homo	INTRON

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	656835	656837	2
Deletion	Chr4	1612052	1612053	1
Deletion	Chr1	7773093	7773099	6	LOC_Os01g13860
Deletion	Chr8	10600626	10600627	1
Deletion	Chr8	11636721	11636726	5
Deletion	Chr6	13196928	13196935	7	LOC_Os06g22690
Deletion	Chr1	13970112	13970115	3	LOC_Os01g24800
Deletion	Chr7	14247041	14247047	6
Deletion	Chr10	15519580	15519590	10
Deletion	Chr1	15869500	15869503	3	LOC_Os01g28330
Deletion	Chr11	16452630	16452631	1
Deletion	Chr1	17767554	17767556	2
Deletion	Chr4	18239290	18244753	5463
Deletion	Chr1	18298299	18298308	9	LOC_Os01g33230
Deletion	Chr4	18541475	18541482	7
Deletion	Chr11	18883631	18883637	6	LOC_Os11g32040
Deletion	Chr9	19783750	19783751	1	LOC_Os09g33550
Deletion	Chr11	20475812	20475813	1
Deletion	Chr6	21962018	21962019	1
Deletion	Chr5	28133448	28133449	1	LOC_Os05g49080
Deletion	Chr2	31376553	31376555	2
Deletion	Chr2	32109917	32109918	1

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr9	18225801	18225801	1	LOC_Os09g29950
Insertion	Chr3	11804029	11804029	1
Insertion	Chr4	8691608	8691608	1
Insertion	Chr4	25120888	25120905	18
Insertion	Chr4	30673104	30673105	2
Insertion	Chr5	8171042	8171042	1
Insertion	Chr5	13584506	13584506	1
Insertion	Chr6	25368332	25368332	1
Insertion	Chr6	25488478	25488478	1
Insertion	Chr7	25308283	25308328	46
Insertion	Chr11	8055179	8055219	41
Insertion	Chr11	11406649	11406649	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	16913410	16949649

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	9247513	Chr2	16194708
Translocation	Chr6	10144734	Chr1	1692522
Translocation	Chr10	10311980	Chr4	5525937
Translocation	Chr7	26712210	Chr4	33521210
Translocation	Chr11	26925422	Chr8	1219480	LOC_Os08g02870

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