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Mutant Information

Mutant Name	FN1615-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1615-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	351426	T-G	HET	INTRON
SBS	Chr1	11221884	G-T	HET	UTR_3_PRIME
SBS	Chr1	16821536	T-C	HET	INTERGENIC
SBS	Chr1	22485209	G-C	HET	INTERGENIC
SBS	Chr1	31113625	C-T	HET	INTRON
SBS	Chr2	29584376	C-T	HET	INTERGENIC
SBS	Chr3	3315761	A-C	HET	INTRON
SBS	Chr3	3315763	C-A	HET	INTRON
SBS	Chr3	10613824	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g18950
SBS	Chr3	11628430	A-C	HET	INTERGENIC
SBS	Chr3	14104830	T-G	Homo	INTERGENIC
SBS	Chr3	15653777	T-C	HET	INTERGENIC
SBS	Chr4	508412	G-C	HET	INTERGENIC
SBS	Chr4	30968024	T-C	HET	INTERGENIC
SBS	Chr5	10557121	A-G	HET	INTERGENIC
SBS	Chr5	12244091	G-T	Homo	INTRON
SBS	Chr5	12244092	G-T	Homo	INTRON
SBS	Chr5	21897131	G-A	HET	INTERGENIC
SBS	Chr6	19387649	G-A	Homo	STOP_GAINED	LOC_Os06g33300
SBS	Chr7	11249142	G-A	HET	INTERGENIC
SBS	Chr8	5561192	C-G	Homo	INTERGENIC
SBS	Chr8	9370125	T-C	HET	INTERGENIC
SBS	Chr8	17643403	T-C	HET	INTERGENIC
SBS	Chr8	18940927	G-A	Homo	INTRON
SBS	Chr8	22283208	G-A	HET	INTERGENIC
SBS	Chr9	3383656	G-A	HET	INTERGENIC
SBS	Chr9	8587768	A-G	HET	SYNONYMOUS_CODING
SBS	Chr9	15486430	A-G	HET	INTERGENIC
SBS	Chr9	16584268	A-T	HET	INTERGENIC
SBS	Chr9	16990758	C-A	HET	INTERGENIC
SBS	Chr10	15983038	C-T	HET	INTERGENIC
SBS	Chr11	1762238	T-C	HET	INTERGENIC
SBS	Chr11	8460929	G-T	Homo	INTERGENIC
SBS	Chr11	12078191	G-T	HET	INTERGENIC
SBS	Chr12	8291212	G-A	HET	INTERGENIC
SBS	Chr12	25472081	A-T	Homo	INTERGENIC
SBS	Chr12	25875631	T-A	Homo	INTERGENIC

Deletions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	213502	213505	3
Deletion	Chr8	530944	530958	14
Deletion	Chr4	2989700	2989701	1	LOC_Os04g05820
Deletion	Chr1	3784060	3784070	10	LOC_Os01g07860
Deletion	Chr5	3942026	3942028	2
Deletion	Chr5	4005251	4005253	2
Deletion	Chr3	5365577	5365579	2
Deletion	Chr5	7927721	7927728	7
Deletion	Chr12	8710126	8710128	2
Deletion	Chr8	10903402	10903403	1	LOC_Os08g17784
Deletion	Chr5	11884340	11884343	3	LOC_Os05g20290
Deletion	Chr9	12801702	12801703	1
Deletion	Chr3	13639635	13639636	1
Deletion	Chr8	14433334	14433335	1
Deletion	Chr4	16907469	16907531	62
Deletion	Chr9	17005857	17005859	2
Deletion	Chr1	17263541	17263547	6
Deletion	Chr4	17509994	17509997	3	LOC_Os04g29450
Deletion	Chr8	18813813	18813814	1
Deletion	Chr7	19785593	19785598	5
Deletion	Chr3	20443536	20443538	2
Deletion	Chr2	21801732	21801734	2
Deletion	Chr7	21966298	21966299	1
Deletion	Chr5	21967172	21967173	1
Deletion	Chr8	22149683	22149690	7
Deletion	Chr11	24175544	24175546	2	LOC_Os11g40510
Deletion	Chr2	24410995	24411000	5	LOC_Os02g40330
Deletion	Chr1	25036473	25036477	4
Deletion	Chr5	29074293	29074294	1
Deletion	Chr2	31269093	31269095	2
Deletion	Chr1	32398147	32398148	1

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	3474836	3474836	1
Insertion	Chr3	20862116	20862157	42
Insertion	Chr4	17505259	17505282	24	LOC_Os04g29440
Insertion	Chr4	20701596	20701597	2
Insertion	Chr5	27164608	27164608	1
Insertion	Chr6	10369851	10369852	2
Insertion	Chr6	27161641	27161650	10
Insertion	Chr7	23157244	23157244	1	LOC_Os07g38550
Insertion	Chr10	5443506	5443507	2	LOC_Os10g10030
Insertion	Chr10	7058895	7058895	1
Insertion	Chr11	26126221	26126221	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	16899664	20420901

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	2511258	Chr2	15328978
Translocation	Chr10	9262029	Chr7	15855198
Translocation	Chr12	11874342	Chr9	18649922
Translocation	Chr5	12316371	Chr2	5528156	LOC_Os02g10510
Translocation	Chr5	12317802	Chr2	5528114	LOC_Os02g10510

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