Search Results

Mutant Information

Mutant Name	FN1618-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1618-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25857315	C-A	HET	INTERGENIC
SBS	Chr1	35011677	C-G	HET	INTERGENIC
SBS	Chr1	39341571	G-A	HET	INTERGENIC
SBS	Chr2	1616462	C-G	Homo	INTERGENIC
SBS	Chr2	22315533	G-C	HET	INTERGENIC
SBS	Chr2	25121400	A-C	HET	INTRON
SBS	Chr3	14413091	C-T	Homo	INTERGENIC
SBS	Chr4	17545	G-C	HET	INTERGENIC
SBS	Chr4	3842322	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g07240
SBS	Chr4	4634355	C-T	Homo	INTERGENIC
SBS	Chr4	5450467	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g10100
SBS	Chr4	7707189	G-A	HET	INTERGENIC
SBS	Chr4	7736339	G-A	HET	INTRON
SBS	Chr4	8128495	C-T	Homo	INTERGENIC
SBS	Chr5	634074	G-A	HET	INTRON
SBS	Chr5	27855170	G-C	HET	INTERGENIC
SBS	Chr6	9689571	C-T	HET	INTERGENIC
SBS	Chr6	10359719	G-T	HET	INTERGENIC
SBS	Chr6	15114125	A-G	HET	INTERGENIC
SBS	Chr6	17695048	T-C	HET	INTERGENIC
SBS	Chr8	1544448	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g03330
SBS	Chr8	4118833	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g07360
SBS	Chr8	26029643	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g41220
SBS	Chr9	5886411	C-A	HET	INTERGENIC
SBS	Chr11	24237317	T-A	HET	INTERGENIC

Deletions: 36

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	836518	836519	1
Deletion	Chr4	1514932	1514944	12
Deletion	Chr12	1661339	1661340	1
Deletion	Chr4	1710222	1710233	11	LOC_Os04g03796
Deletion	Chr10	2285296	2287837	2541
Deletion	Chr8	5051065	5051075	10
Deletion	Chr10	5393401	5393406	5
Deletion	Chr10	5565396	5565402	6
Deletion	Chr1	5836653	5836656	3
Deletion	Chr3	6568042	6568048	6	LOC_Os03g12440
Deletion	Chr11	6872965	6872969	4	LOC_Os11g12300
Deletion	Chr12	7401501	7401502	1
Deletion	Chr2	7689975	7689976	1
Deletion	Chr4	8128496	8128501	5
Deletion	Chr1	8166631	8166634	3	LOC_Os01g14570
Deletion	Chr7	8984896	8984897	1
Deletion	Chr11	13700225	13700226	1	LOC_Os11g24100
Deletion	Chr3	16716078	16716095	17
Deletion	Chr8	16922091	16922092	1
Deletion	Chr5	17571294	17571303	9
Deletion	Chr9	17667030	17667032	2
Deletion	Chr12	19019001	19056000	37000	5
Deletion	Chr8	19655096	19655098	2
Deletion	Chr5	21506750	21506752	2
Deletion	Chr11	22254354	22254366	12
Deletion	Chr9	22641664	22641678	14
Deletion	Chr11	23819925	23819933	8	LOC_Os11g39960
Deletion	Chr12	25231021	25231022	1
Deletion	Chr7	27122135	27122137	2	LOC_Os07g45460
Deletion	Chr4	27547034	27547038	4
Deletion	Chr3	28536164	28536177	13
Deletion	Chr2	30240761	30240762	1
Deletion	Chr4	32655245	32655248	3
Deletion	Chr3	32796808	32796809	1
Deletion	Chr3	34965807	34965811	4
Deletion	Chr1	40449170	40449174	4

Insertions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr9	1716835	1716837	3
Insertion	Chr7	26107125	26107126	2
Insertion	Chr1	17809437	17809440	4
Insertion	Chr1	30072306	30072365	60
Insertion	Chr2	6766927	6766930	4
Insertion	Chr3	32604039	32604039	1
Insertion	Chr4	33165043	33165066	24
Insertion	Chr6	8619234	8619255	22	LOC_Os06g15210
Insertion	Chr6	17019334	17019334	1
Insertion	Chr8	17940641	17940641	1
Insertion	Chr10	3986710	3986711	2
Insertion	Chr10	13688979	13688980	2
Insertion	Chr11	10895601	10895601	1
Insertion	Chr11	11895259	11895262	4

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	19407676	Chr1	27650033
Translocation	Chr4	33532190	Chr1	41587107	LOC_Os04g56240

Main menu