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Mutant Information

Mutant Name	FN1619-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1619-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 44

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21079068	C-A	Homo	INTRON
SBS	Chr1	32439563	G-T	HET	UTR_3_PRIME
SBS	Chr1	36036711	T-C	HET	INTERGENIC
SBS	Chr1	8742485	T-C	Homo	INTERGENIC
SBS	Chr10	17834058	C-T	HET	INTERGENIC
SBS	Chr10	5230666	C-T	HET	INTERGENIC
SBS	Chr10	7103540	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g12740
SBS	Chr11	10061702	G-A	HET	INTERGENIC
SBS	Chr11	26111212	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g43280
SBS	Chr11	7391556	G-T	Homo	INTERGENIC
SBS	Chr12	10844427	G-A	Homo	INTERGENIC
SBS	Chr12	25155415	G-T	Homo	INTERGENIC
SBS	Chr12	8951291	C-T	HET	INTRON
SBS	Chr2	10458660	G-T	Homo	INTERGENIC
SBS	Chr2	23962042	C-T	Homo	INTERGENIC
SBS	Chr2	33733631	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g55070
SBS	Chr2	899098	C-G	HET	SPLICE_SITE_REGION
SBS	Chr3	11076762	C-T	HET	INTRON
SBS	Chr3	30903703	G-A	HET	INTERGENIC
SBS	Chr3	33122697	C-T	Homo	INTERGENIC
SBS	Chr3	5922104	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g11470
SBS	Chr4	812731	G-T	Homo	INTERGENIC
SBS	Chr5	27210257	T-A	HET	INTERGENIC
SBS	Chr5	28768045	T-A	HET	INTRON
SBS	Chr5	29416887	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	4052628	G-T	HET	INTERGENIC
SBS	Chr6	11469000	C-A	HET	INTERGENIC
SBS	Chr6	13083044	A-T	HET	INTERGENIC
SBS	Chr6	20218978	A-C	HET	INTERGENIC
SBS	Chr6	26151149	C-T	HET	INTERGENIC
SBS	Chr6	8448560	T-C	HET	SPLICE_SITE_REGION
SBS	Chr7	10608673	C-T	HET	INTERGENIC
SBS	Chr7	16253726	T-A	HET	INTERGENIC
SBS	Chr7	17265759	C-T	HET	SYNONYMOUS_CODING
SBS	Chr7	25283948	C-T	HET	INTERGENIC
SBS	Chr7	29253604	A-G	HET	INTERGENIC
SBS	Chr7	9444354	C-A	HET	INTERGENIC
SBS	Chr8	10825215	T-C	HET	INTRON
SBS	Chr8	17455807	T-A	HET	INTRON
SBS	Chr8	23147055	T-A	HET	INTERGENIC
SBS	Chr8	3804896	G-A	Homo	INTERGENIC
SBS	Chr9	6722121	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g11940
SBS	Chr9	8873948	G-T	Homo	INTERGENIC
SBS	Chr9	9147209	G-A	HET	INTRON

Deletions: 37

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	2881237	2881247	10
Deletion	Chr5	3060231	3060232	1
Deletion	Chr12	5599215	5599342	127
Deletion	Chr5	9039406	9039412	6
Deletion	Chr2	9579989	9580008	19
Deletion	Chr2	9588487	9588506	19
Deletion	Chr12	9979371	9979372	1
Deletion	Chr2	10406190	10406191	1
Deletion	Chr4	10644497	10644503	6
Deletion	Chr8	10717865	10717868	3
Deletion	Chr2	12654030	12654043	13	LOC_Os02g21320
Deletion	Chr11	14391001	14429000	38000	6
Deletion	Chr2	16762902	16762910	8
Deletion	Chr8	16863499	16863516	17	2
Deletion	Chr8	16912515	16912551	36	LOC_Os08g27759
Deletion	Chr8	17852926	17852929	3
Deletion	Chr3	18222230	18222240	10
Deletion	Chr10	18899571	18899572	1
Deletion	Chr7	19026030	19026032	2
Deletion	Chr12	19688815	19688816	1
Deletion	Chr5	20117218	20117219	1
Deletion	Chr2	20297036	20297037	1	LOC_Os02g34000
Deletion	Chr8	21164568	21164597	29
Deletion	Chr10	22287066	22287067	1
Deletion	Chr2	22612125	22612127	2
Deletion	Chr6	23101253	23101257	4
Deletion	Chr7	25468869	25468885	16
Deletion	Chr12	25835322	25835335	13
Deletion	Chr6	25929896	25929897	1
Deletion	Chr5	27628253	27628274	21
Deletion	Chr5	28756190	28756191	1
Deletion	Chr3	29706275	29706276	1	LOC_Os03g51790
Deletion	Chr1	32697667	32697678	11
Deletion	Chr3	33012916	33012917	1	LOC_Os03g57950
Deletion	Chr3	33197094	33197105	11
Deletion	Chr4	34225539	34225541	2
Deletion	Chr1	41983468	41983469	1	LOC_Os01g72380

Insertions: 13

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	3053142	3053147	6
Insertion	Chr1	42965165	42965166	2
Insertion	Chr10	13262373	13262416	44
Insertion	Chr10	2875049	2875049	1
Insertion	Chr12	3684663	3684663	1
Insertion	Chr3	12114390	12114391	2
Insertion	Chr3	24657743	24657743	1
Insertion	Chr3	4143849	4143866	18
Insertion	Chr5	21910962	21910962	1
Insertion	Chr5	524617	524618	2
Insertion	Chr6	27452264	27452273	10
Insertion	Chr8	10058020	10058023	4
Insertion	Chr9	6640600	6640600	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	14374246	14899593	LOC_Os01g25402
Inversion	Chr1	14732573	15964804	LOC_Os01g25990

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	15550226	Chr5	5643363
Translocation	Chr8	18930324	Chr1	3645085

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