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Mutant Information

Mutant Name	FN1622-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1622-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13177848	G-T	Homo	INTERGENIC
SBS	Chr1	23570377	A-T	Homo	INTRON
SBS	Chr1	23570379	G-T	Homo	INTRON
SBS	Chr1	25603361	C-A	Homo	INTERGENIC
SBS	Chr1	5642793	C-A	HET	INTERGENIC
SBS	Chr10	15455237	A-G	HET	INTERGENIC
SBS	Chr10	23031584	A-G	Homo	UTR_3_PRIME
SBS	Chr11	14358174	C-G	HET	INTERGENIC
SBS	Chr11	22084163	G-C	HET	INTERGENIC
SBS	Chr11	25344579	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g42090
SBS	Chr11	27995258	A-T	HET	INTRON
SBS	Chr12	21377748	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g35130
SBS	Chr12	3609418	C-T	HET	INTERGENIC
SBS	Chr2	15343009	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g26110
SBS	Chr3	6252121	C-G	HET	INTERGENIC
SBS	Chr4	10679321	A-G	Homo	INTERGENIC
SBS	Chr4	23095495	C-A	Homo	INTRON
SBS	Chr4	2955037	A-G	HET	INTERGENIC
SBS	Chr5	22078482	C-T	HET	INTRON
SBS	Chr5	26483046	G-C	HET	INTERGENIC
SBS	Chr6	17280587	T-A	HET	INTERGENIC
SBS	Chr6	23713889	G-A	HET	INTERGENIC
SBS	Chr6	5727061	G-A	HET	INTERGENIC
SBS	Chr7	20249343	T-C	Homo	UTR_5_PRIME
SBS	Chr9	17889772	C-T	HET	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1317241	1317242	1	LOC_Os09g02814
Deletion	Chr6	2233332	2233334	2
Deletion	Chr11	2295243	2295247	4
Deletion	Chr11	2637171	2637172	1
Deletion	Chr12	3528541	3528547	6
Deletion	Chr10	4696510	4696534	24
Deletion	Chr2	7168866	7168870	4
Deletion	Chr9	8183982	8183988	6
Deletion	Chr12	8735351	8735352	1
Deletion	Chr6	11430463	11430471	8
Deletion	Chr7	12258334	12264235	5901
Deletion	Chr1	13124619	13124627	8
Deletion	Chr11	14376001	14483000	107000	14
Deletion	Chr2	17318818	17318827	9
Deletion	Chr3	21234872	21234873	1	LOC_Os03g38250
Deletion	Chr11	22308787	22308798	11
Deletion	Chr2	23869770	23869776	6
Deletion	Chr5	24476906	24476933	27
Deletion	Chr2	24654012	24654017	5
Deletion	Chr3	24741462	24741472	10
Deletion	Chr1	26771675	26771676	1
Deletion	Chr1	27040791	27040792	1
Deletion	Chr5	27904717	27904721	4
Deletion	Chr6	30195443	30195445	2
Deletion	Chr2	30357925	30357937	12
Deletion	Chr1	42857447	42857451	4	LOC_Os01g73980

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	13350424	13350444	21
Insertion	Chr1	13554297	13554298	2
Insertion	Chr4	8260967	8260973	7
Insertion	Chr5	5037856	5037914	59	LOC_Os05g09070
Insertion	Chr6	24944786	24944786	1
Insertion	Chr7	4420152	4420163	12
Insertion	Chr8	13728309	13728311	3
Insertion	Chr8	4719724	4719803	80
Insertion	Chr9	9371299	9371349	51

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	615718	9357428
Inversion	Chr4	11150984	21743890	LOC_Os04g20000
Inversion	Chr11	14375979	14533828
Inversion	Chr11	14483661	14533826	LOC_Os11g25400

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	2299641	Chr7	24482767
Translocation	Chr4	11150983	Chr2	11365279	LOC_Os04g20000
Translocation	Chr4	11304027	Chr2	11369346	LOC_Os02g19460
Translocation	Chr11	11899767	Chr3	33248227
Translocation	Chr12	13389330	Chr1	28118122	LOC_Os01g48980
Translocation	Chr3	17136827	Chr2	24543549
Translocation	Chr3	20789164	Chr1	4653367
Translocation	Chr7	26937037	Chr5	14654919	LOC_Os07g45120

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