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Mutant Information

Mutant Name	FN1623-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1623-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22972324	T-A	Homo	INTERGENIC
SBS	Chr1	28566540	A-T	Homo	INTERGENIC
SBS	Chr1	38743929	C-T	Homo	INTRON
SBS	Chr1	40685653	T-A	Homo	INTERGENIC
SBS	Chr10	2141532	A-T	Homo	INTERGENIC
SBS	Chr10	5486005	T-A	Homo	INTERGENIC
SBS	Chr10	8080302	C-T	HET	INTERGENIC
SBS	Chr11	20548777	A-G	HET	INTERGENIC
SBS	Chr11	8794086	G-C	HET	INTRON
SBS	Chr12	12350668	A-T	HET	SYNONYMOUS_CODING
SBS	Chr12	19509480	G-T	HET	INTRON
SBS	Chr12	8954890	G-T	HET	INTRON
SBS	Chr2	12426862	T-C	Homo	INTERGENIC
SBS	Chr3	11279323	C-T	HET	INTERGENIC
SBS	Chr3	22827488	C-T	Homo	UTR_5_PRIME
SBS	Chr3	34375686	A-C	HET	INTERGENIC
SBS	Chr3	35311212	C-A	HET	INTERGENIC
SBS	Chr4	10792584	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr4	1538725	C-T	Homo	INTERGENIC
SBS	Chr4	2352407	C-T	HET	SYNONYMOUS_CODING
SBS	Chr6	20865004	A-T	Homo	INTRON
SBS	Chr6	21338836	C-T	Homo	INTERGENIC
SBS	Chr6	27922060	C-G	HET	INTERGENIC
SBS	Chr6	4392482	G-A	HET	INTERGENIC
SBS	Chr7	14026266	C-T	Homo	INTERGENIC
SBS	Chr7	1810383	G-T	HET	INTERGENIC
SBS	Chr7	183229	A-C	Homo	UTR_5_PRIME
SBS	Chr7	183231	G-A	Homo	UTR_5_PRIME
SBS	Chr7	5873087	A-T	HET	INTERGENIC
SBS	Chr8	11789663	G-A	Homo	INTRON
SBS	Chr8	20680551	C-T	Homo	INTERGENIC
SBS	Chr8	25162059	A-G	HET	INTERGENIC
SBS	Chr9	19457722	A-T	HET	INTERGENIC
SBS	Chr9	4067243	C-A	Homo	INTRON
SBS	Chr9	6162278	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g11110
SBS	Chr9	9237013	A-G	HET	INTERGENIC

Deletions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	606451	606452	1
Deletion	Chr4	609741	609742	1
Deletion	Chr10	736883	736890	7	LOC_Os10g02160
Deletion	Chr9	1152149	1152154	5
Deletion	Chr8	1431220	1431228	8
Deletion	Chr8	1440131	1440139	8
Deletion	Chr9	2680241	2680246	5
Deletion	Chr11	2815547	2815549	2	LOC_Os11g05980
Deletion	Chr6	4407128	4407134	6
Deletion	Chr3	10366424	10366427	3
Deletion	Chr4	11410885	11410893	8
Deletion	Chr10	11962293	11965982	3689
Deletion	Chr10	13563562	13563564	2
Deletion	Chr10	14353405	14353676	271
Deletion	Chr3	14415369	14415370	1
Deletion	Chr4	17371198	17371199	1
Deletion	Chr8	17643067	17643068	1
Deletion	Chr12	18450001	18584000	134000	19
Deletion	Chr10	19880077	19880078	1
Deletion	Chr8	20228476	20228477	1
Deletion	Chr4	20574010	20574011	1
Deletion	Chr3	22594174	22594181	7
Deletion	Chr7	23903042	23903043	1	LOC_Os07g39860
Deletion	Chr6	24073330	24073340	10
Deletion	Chr8	24484905	24484907	2	LOC_Os08g38720
Deletion	Chr11	25185311	25185312	1
Deletion	Chr6	25342701	25342704	3
Deletion	Chr5	25428218	25428219	1
Deletion	Chr6	26102884	26102887	3
Deletion	Chr3	27884090	27884092	2
Deletion	Chr5	29933161	29957175	24014	LOC_Os05g52120

Insertions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	16406461	16406461	1
Insertion	Chr10	13451873	13451911	39
Insertion	Chr10	18094826	18094826	1
Insertion	Chr10	8216531	8216531	1
Insertion	Chr11	20877812	20877855	44
Insertion	Chr11	9843451	9843451	1
Insertion	Chr12	18512029	18512080	52
Insertion	Chr4	22925722	22925743	22	LOC_Os04g38580
Insertion	Chr4	29205757	29205771	15
Insertion	Chr4	8411775	8411775	1
Insertion	Chr6	18791059	18791102	44
Insertion	Chr7	11426019	11426072	54
Insertion	Chr7	20208158	20208158	1
Insertion	Chr7	22426877	22426880	4
Insertion	Chr7	25872667	25872667	1
Insertion	Chr9	15159192	15159227	36

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	21266764	21815016

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	21983057	Chr5	12725490
Translocation	Chr11	24622474	Chr2	11417389

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