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Mutant Information

Mutant Name	FN1630-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1630-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 53

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21792679	G-A	Homo	INTERGENIC
SBS	Chr10	16604583	G-A	HET	INTERGENIC
SBS	Chr10	20697641	C-T	HET	INTERGENIC
SBS	Chr11	10111933	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g17990
SBS	Chr11	14100823	T-C	HET	INTERGENIC
SBS	Chr11	17716746	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g30470
SBS	Chr11	20218222	T-C	HET	INTERGENIC
SBS	Chr11	20783228	T-A	Homo	INTERGENIC
SBS	Chr11	9514556	G-A	HET	INTERGENIC
SBS	Chr12	17435778	G-T	HET	INTERGENIC
SBS	Chr12	18712657	G-T	HET	INTERGENIC
SBS	Chr12	20406476	C-A	HET	INTERGENIC
SBS	Chr12	8264907	T-C	HET	INTERGENIC
SBS	Chr2	11510302	T-G	Homo	INTRON
SBS	Chr2	27517627	G-C	Homo	INTERGENIC
SBS	Chr2	32212683	C-A	HET	INTERGENIC
SBS	Chr3	14005514	T-C	HET	INTERGENIC
SBS	Chr3	19830286	T-C	HET	INTERGENIC
SBS	Chr3	26924224	C-T	HET	INTRON
SBS	Chr3	470091	G-T	HET	INTERGENIC
SBS	Chr3	5117584	A-G	HET	SYNONYMOUS_CODING
SBS	Chr4	13888214	G-A	Homo	INTERGENIC
SBS	Chr4	16399900	G-A	HET	INTERGENIC
SBS	Chr4	21810413	T-A	Homo	INTERGENIC
SBS	Chr4	23979097	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g40330
SBS	Chr5	10617848	G-A	HET	INTERGENIC
SBS	Chr5	18819226	T-C	HET	INTERGENIC
SBS	Chr5	20860796	C-T	HET	INTERGENIC
SBS	Chr5	24059929	C-T	Homo	INTERGENIC
SBS	Chr5	24059933	A-T	Homo	INTERGENIC
SBS	Chr5	26290121	A-C	Homo	INTRON
SBS	Chr5	27404796	G-A	HET	INTERGENIC
SBS	Chr5	27633305	C-T	HET	INTRON
SBS	Chr5	6770482	G-A	HET	INTERGENIC
SBS	Chr6	20921471	G-A	HET	INTERGENIC
SBS	Chr6	7251190	G-A	Homo	INTERGENIC
SBS	Chr7	12791736	C-T	HET	INTERGENIC
SBS	Chr7	17248992	C-T	HET	INTERGENIC
SBS	Chr7	18880290	G-T	HET	INTERGENIC
SBS	Chr7	18880291	A-T	HET	INTERGENIC
SBS	Chr7	18880296	C-T	HET	INTERGENIC
SBS	Chr7	26705339	A-C	HET	INTERGENIC
SBS	Chr7	27439607	T-G	HET	INTERGENIC
SBS	Chr7	9882076	A-G	HET	SYNONYMOUS_CODING
SBS	Chr8	14412828	G-A	HET	INTERGENIC
SBS	Chr8	16216144	T-C	HET	INTERGENIC
SBS	Chr8	16244820	G-A	HET	INTERGENIC
SBS	Chr8	24169735	G-A	HET	INTERGENIC
SBS	Chr8	6481005	G-T	HET	SYNONYMOUS_CODING
SBS	Chr8	7618304	C-T	HET	INTRON
SBS	Chr8	8359394	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g13950
SBS	Chr9	3785355	G-T	HET	INTERGENIC
SBS	Chr9	4165307	C-A	HET	INTERGENIC

Deletions: 43

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	533343	533351	8	LOC_Os11g02000
Deletion	Chr10	862650	862651	1
Deletion	Chr10	999850	999851	1
Deletion	Chr2	3743240	3743241	1
Deletion	Chr2	3869584	3869596	12
Deletion	Chr2	3980479	3980483	4
Deletion	Chr4	4789224	4789239	15	LOC_Os04g08780
Deletion	Chr5	5028003	5028024	21
Deletion	Chr3	6712562	6712568	6
Deletion	Chr5	6916972	6916973	1
Deletion	Chr6	7046530	7046538	8
Deletion	Chr10	8496727	8496733	6
Deletion	Chr10	8643797	8651329	7532	LOC_Os10g17210
Deletion	Chr1	8796797	8796799	2
Deletion	Chr8	10571500	10571507	7
Deletion	Chr11	11794048	11794056	8
Deletion	Chr11	12274591	12274708	117
Deletion	Chr3	12952482	12952485	3	LOC_Os03g22540
Deletion	Chr1	13746962	13746964	2
Deletion	Chr10	15021465	15021467	2
Deletion	Chr1	15073296	15073304	8
Deletion	Chr12	15551672	15551678	6
Deletion	Chr12	16105803	16105906	103
Deletion	Chr5	16301721	16301724	3
Deletion	Chr7	16329665	16329666	1
Deletion	Chr11	16720900	16720901	1	LOC_Os11g28890
Deletion	Chr7	17706686	17706693	7	LOC_Os07g30040
Deletion	Chr11	18422529	18422543	14
Deletion	Chr3	19322985	19322996	11
Deletion	Chr2	20313537	20313538	1
Deletion	Chr6	20359975	20361275	1300	LOC_Os06g35010
Deletion	Chr7	20530001	20570000	40000	4
Deletion	Chr7	21181788	21181789	1
Deletion	Chr9	21640545	21640566	21
Deletion	Chr8	21906458	21906480	22	LOC_Os08g34820
Deletion	Chr7	23972585	23972586	1
Deletion	Chr5	24202001	24255000	53000	10
Deletion	Chr7	25804528	25804529	1	LOC_Os07g43070
Deletion	Chr2	29344603	29344612	9	LOC_Os02g47970
Deletion	Chr1	30421641	30421654	13
Deletion	Chr1	31828417	31828420	3	LOC_Os01g55290
Deletion	Chr3	33609841	33609844	3
Deletion	Chr3	34182184	34182189	5

Insertions: 17

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	146513	146513	1
Insertion	Chr12	22593966	22593966	1
Insertion	Chr3	13822301	13822301	1
Insertion	Chr3	23983568	23983623	56
Insertion	Chr4	15604028	15604028	1
Insertion	Chr4	15766681	15766681	1
Insertion	Chr4	2007485	2007485	1
Insertion	Chr5	1508747	1508747	1
Insertion	Chr5	20704699	20704720	22
Insertion	Chr5	7407067	7407068	2
Insertion	Chr6	14986975	14986986	12
Insertion	Chr6	9678593	9678594	2
Insertion	Chr7	1905645	1905648	4
Insertion	Chr7	609738	609755	18
Insertion	Chr8	14434579	14434581	3
Insertion	Chr8	8653822	8653822	1
Insertion	Chr9	10441469	10441469	1

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	11338822	Chr6	10850162	2
Translocation	Chr6	12594675	Chr1	32531298

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