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Mutant Information

Mutant Name	FN1631-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1631-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	5504339	A-T	Homo	UTR_3_PRIME
SBS	Chr2	29517288	C-A	Homo	INTRON
SBS	Chr3	767187	G-A	HET	STOP_GAINED	LOC_Os03g02260
SBS	Chr3	22135528	C-A	Homo	INTERGENIC
SBS	Chr3	24667470	C-T	Homo	INTERGENIC
SBS	Chr3	26435826	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g46710
SBS	Chr4	30175	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g01030
SBS	Chr4	6122695	G-A	HET	INTERGENIC
SBS	Chr4	6654166	A-G	HET	INTERGENIC
SBS	Chr4	9624138	T-A	HET	INTERGENIC
SBS	Chr4	21430582	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g35260
SBS	Chr4	27836982	C-T	HET	UTR_3_PRIME
SBS	Chr5	7142261	C-T	HET	STOP_GAINED	LOC_Os05g12420
SBS	Chr5	15957230	C-T	HET	INTERGENIC
SBS	Chr5	25614335	C-T	Homo	INTERGENIC
SBS	Chr5	25614336	G-T	Homo	INTERGENIC
SBS	Chr6	11230724	T-C	Homo	INTRON
SBS	Chr7	20473670	A-G	Homo	INTERGENIC
SBS	Chr8	5916606	G-C	Homo	INTERGENIC
SBS	Chr9	3564110	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g07270
SBS	Chr9	11545182	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g19290
SBS	Chr9	18675014	C-T	Homo	INTERGENIC
SBS	Chr11	3212600	C-A	Homo	INTERGENIC
SBS	Chr11	8688934	C-G	HET	INTERGENIC
SBS	Chr12	20041781	A-T	HET	INTERGENIC

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	2128896	2128897	1
Deletion	Chr8	4371349	4371350	1
Deletion	Chr10	4997389	4997398	9
Deletion	Chr4	6099069	6099072	3
Deletion	Chr5	6157368	6157369	1
Deletion	Chr10	6839709	6839724	15
Deletion	Chr8	9039646	9039661	15
Deletion	Chr2	10618494	10618496	2
Deletion	Chr1	10710589	10710590	1
Deletion	Chr6	11691561	11691569	8
Deletion	Chr7	12783048	12783050	2
Deletion	Chr5	12840078	12840079	1
Deletion	Chr1	13309878	13309879	1
Deletion	Chr4	13792669	13792675	6
Deletion	Chr3	14488408	14488409	1
Deletion	Chr8	15928590	15928940	350
Deletion	Chr12	16861037	16861038	1
Deletion	Chr5	17348988	17354772	5784	LOC_Os05g30000
Deletion	Chr12	19415582	19415651	69
Deletion	Chr8	20082429	20082436	7
Deletion	Chr2	20707437	20707438	1
Deletion	Chr11	22320166	22320168	2
Deletion	Chr1	22615700	22615703	3
Deletion	Chr6	24483020	24483021	1
Deletion	Chr2	26716943	26717014	71
Deletion	Chr3	30697728	30697730	2
Deletion	Chr4	32078764	32085857	7093	3
Deletion	Chr3	33424761	33424763	2
Deletion	Chr3	35970240	35970252	12	LOC_Os03g63680
Deletion	Chr1	36152813	36152826	13

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	25245398	25245399	2
Insertion	Chr5	10166805	10166806	2
Insertion	Chr7	3839375	3839375	1
Insertion	Chr8	23428968	23428968	1
Insertion	Chr9	4781890	4781895	6
Insertion	Chr10	757685	757685	1
Insertion	Chr11	7305659	7305660	2
Insertion	Chr11	11970285	11970285	1	LOC_Os11g20650
Insertion	Chr11	16779721	16779721	1	LOC_Os11g28990

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	8790761	11775504	LOC_Os08g14610
Inversion	Chr8	8790777	10588636	LOC_Os08g14610

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	8214649	Chr5	29794244
Translocation	Chr12	8494119	Chr4	17935005	LOC_Os04g30040

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