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Mutant Information

Mutant Name	FN1633-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1633-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (40% Albino) TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 51

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16290143	A-G	HET	INTERGENIC
SBS	Chr1	17840184	T-G	HET	INTERGENIC
SBS	Chr1	22458832	G-A	HET	INTERGENIC
SBS	Chr1	5070091	A-G	HET	INTERGENIC
SBS	Chr1	6748941	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr10	11961727	G-A	HET	INTERGENIC
SBS	Chr10	11961729	G-T	HET	INTERGENIC
SBS	Chr11	13077015	A-C	HET	INTERGENIC
SBS	Chr11	17237260	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g29720
SBS	Chr11	25696881	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g42660
SBS	Chr11	5959404	C-T	HET	INTERGENIC
SBS	Chr11	977852	C-T	HET	INTRON
SBS	Chr12	11575156	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g19850
SBS	Chr12	1431062	G-T	HET	INTRON
SBS	Chr12	24302524	C-A	HET	INTERGENIC
SBS	Chr2	15354544	G-A	HET	INTERGENIC
SBS	Chr2	29735826	C-A	HET	INTERGENIC
SBS	Chr3	19590162	C-T	HET	INTRON
SBS	Chr3	20308688	C-A	HET	INTERGENIC
SBS	Chr3	20723114	T-A	HET	SYNONYMOUS_CODING
SBS	Chr3	22884860	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g41160
SBS	Chr3	5676925	G-A	HET	INTERGENIC
SBS	Chr3	8823254	A-T	Homo	INTRON
SBS	Chr4	23144813	C-A	Homo	INTERGENIC
SBS	Chr4	28748525	G-A	HET	INTERGENIC
SBS	Chr5	22168340	C-G	HET	INTERGENIC
SBS	Chr5	26747466	G-A	HET	INTERGENIC
SBS	Chr6	16563951	G-A	HET	INTERGENIC
SBS	Chr6	17219009	C-A	HET	INTERGENIC
SBS	Chr6	17219010	T-A	HET	INTERGENIC
SBS	Chr6	17219011	G-A	HET	INTERGENIC
SBS	Chr6	17559798	A-G	HET	INTRON
SBS	Chr6	23659070	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g39820
SBS	Chr6	26874575	C-T	HET	INTERGENIC
SBS	Chr7	10454325	G-A	HET	INTERGENIC
SBS	Chr7	14768018	C-A	HET	INTERGENIC
SBS	Chr7	15751722	G-T	HET	INTRON
SBS	Chr7	17654083	T-A	HET	INTERGENIC
SBS	Chr7	20349655	A-T	HET	INTERGENIC
SBS	Chr7	22890902	T-A	HET	UTR_5_PRIME
SBS	Chr8	12656961	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g21200
SBS	Chr8	25187103	C-T	HET	INTERGENIC
SBS	Chr8	6054575	G-C	Homo	INTERGENIC
SBS	Chr9	14224490	G-C	Homo	INTERGENIC
SBS	Chr9	1903509	C-T	HET	INTERGENIC
SBS	Chr9	19722499	C-G	HET	INTERGENIC
SBS	Chr9	2978993	A-C	HET	INTERGENIC
SBS	Chr9	3451098	A-G	HET	INTRON
SBS	Chr9	8432713	A-T	HET	INTRON
SBS	Chr9	8432714	G-T	HET	INTRON
SBS	Chr9	9207900	A-T	HET	SPLICE_SITE_REGION

Deletions: 48

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	39683	39687	4
Deletion	Chr9	2981449	2981464	15
Deletion	Chr1	3294800	3303681	8881	4
Deletion	Chr2	4170171	4170172	1
Deletion	Chr2	4238242	4238250	8
Deletion	Chr8	4345404	4345423	19
Deletion	Chr8	4594516	4594518	2
Deletion	Chr8	6111034	6111044	10
Deletion	Chr7	6388782	6388787	5
Deletion	Chr1	7318110	7318111	1
Deletion	Chr6	7785039	7785040	1
Deletion	Chr10	8096412	8096414	2
Deletion	Chr2	8288386	8288387	1
Deletion	Chr6	8716540	8716548	8
Deletion	Chr7	9733911	9733916	5	LOC_Os07g16590
Deletion	Chr7	10347316	10347322	6
Deletion	Chr11	11517501	11517512	11
Deletion	Chr10	12300605	12300606	1
Deletion	Chr1	12755267	12755268	1
Deletion	Chr10	13159516	13159517	1
Deletion	Chr9	13724000	13724004	4
Deletion	Chr10	14050798	14050799	1
Deletion	Chr7	14486480	14486482	2
Deletion	Chr9	15145204	15145293	89	LOC_Os09g25300
Deletion	Chr7	15837631	15837641	10
Deletion	Chr8	17273465	17273466	1
Deletion	Chr7	17414800	17414801	1
Deletion	Chr9	17449376	17449378	2	LOC_Os09g28690
Deletion	Chr6	17702748	17702811	63
Deletion	Chr10	19424231	19424237	6
Deletion	Chr6	20195736	20195745	9
Deletion	Chr3	20294886	20294903	17	LOC_Os03g36600
Deletion	Chr2	20302601	20304380	1779
Deletion	Chr11	20545599	20545600	1
Deletion	Chr10	20569918	20569940	22
Deletion	Chr3	21293852	21293853	1
Deletion	Chr1	21667735	21667744	9	LOC_Os01g38580
Deletion	Chr8	22252494	22252505	11
Deletion	Chr9	22962001	23013000	51000	9
Deletion	Chr4	24893837	24903051	9214	2
Deletion	Chr4	25809769	25809772	3
Deletion	Chr2	25874843	25874850	7
Deletion	Chr12	26477776	26477778	2	LOC_Os12g42610
Deletion	Chr7	26767343	26767344	1
Deletion	Chr6	26945523	26945539	16	LOC_Os06g44620
Deletion	Chr2	27196339	27196348	9
Deletion	Chr3	28241822	28241831	9	LOC_Os03g49600
Deletion	Chr1	30509188	30509198	10

Insertions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	6021022	6021025	4	LOC_Os11g10910
Insertion	Chr12	16737096	16737096	1
Insertion	Chr3	12930154	12930171	18	LOC_Os03g22510
Insertion	Chr4	19542729	19542729	1
Insertion	Chr5	12042218	12042218	1
Insertion	Chr5	7539901	7539901	1
Insertion	Chr5	7814999	7815000	2
Insertion	Chr6	10581862	10581863	2
Insertion	Chr7	11319117	11319118	2
Insertion	Chr7	201046	201047	2
Insertion	Chr8	10375796	10375796	1
Insertion	Chr8	27428570	27428573	4
Insertion	Chr8	9284999	9285004	6
Insertion	Chr9	18046414	18046415	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	762339	1889266	LOC_Os08g03960
Inversion	Chr1	5822535	6005259	LOC_Os01g11220
Inversion	Chr1	5890477	6005257	LOC_Os01g11220

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	4646981	Chr7	22890621	2
Translocation	Chr8	4647481	Chr7	22890615	2
Translocation	Chr8	12681547	Chr4	3704776

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