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Mutant Information

Mutant Name	FN1635-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1635-S Alignment File
Seed Availability	No
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype
SBS	Chr1	23040030	C-T	HET
SBS	Chr1	30659629	A-G	HET
SBS	Chr10	13103904	C-T	HET
SBS	Chr10	13103906	G-T	HET
SBS	Chr10	3723903	T-A	HET
SBS	Chr11	22947680	T-A	HET
SBS	Chr11	23831774	A-C	HET
SBS	Chr11	2389470	T-C	HET
SBS	Chr2	24909342	A-G	HET
SBS	Chr2	34710839	A-C	HET
SBS	Chr3	1019528	G-T	HET
SBS	Chr3	16046690	C-A	HET
SBS	Chr4	15998299	C-A	Homo
SBS	Chr5	13882594	T-G	HET
SBS	Chr5	27171711	A-T	HET
SBS	Chr6	10891740	C-T	HET
SBS	Chr6	16472103	C-T	HET
SBS	Chr6	20928945	C-T	HET
SBS	Chr7	1542844	A-C	HET
SBS	Chr7	20073231	G-A	HET
SBS	Chr7	27817958	C-A	HET
SBS	Chr7	6072051	T-A	HET
SBS	Chr7	9654982	A-T	HET

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	4462687	4462688	1
Deletion	Chr2	4773001	4807000	33999	8
Deletion	Chr12	5635992	5635993	1
Deletion	Chr2	6371205	6371215	10
Deletion	Chr1	8840816	8840817	1
Deletion	Chr10	10900069	10900070	1
Deletion	Chr11	12301248	12301414	166
Deletion	Chr3	12686046	12686047	1
Deletion	Chr12	13244784	13244785	1
Deletion	Chr9	13652001	13666000	13999
Deletion	Chr6	15480128	15480129	1
Deletion	Chr5	19651001	19678000	26999	6
Deletion	Chr11	25683063	25683064	1
Deletion	Chr3	31640656	31640677	21
Deletion	Chr3	36327826	36327827	1

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	820890	820890	1
Insertion	Chr12	10166845	10166845	1
Insertion	Chr12	23225209	23225209	1
Insertion	Chr2	16137931	16137931	1
Insertion	Chr4	15215445	15215480	36
Insertion	Chr4	1955347	1955347	1	LOC_Os04g04200
Insertion	Chr5	4378476	4378477	2
Insertion	Chr6	23590120	23590120	1	LOC_Os06g39740
Insertion	Chr9	4160493	4160518	26

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	4805555	5188752	LOC_Os02g09340
Inversion	Chr8	10583144	10583427
Inversion	Chr4	19925644	20210980	LOC_Os04g32960
Inversion	Chr8	25636805	25751859

Translocations: 14

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	1243	Chr2	162
Translocation	Chr12	7738206	Chr9	6467109	2
Translocation	Chr12	8540937	Chr1	39127625	LOC_Os12g14930
Translocation	Chr10	11150108	Chr7	10511346
Translocation	Chr10	13371060	Chr8	27373562
Translocation	Chr12	15112010	Chr11	8815781	2
Translocation	Chr12	16453339	Chr9	13333418	2
Translocation	Chr12	17680369	Chr1	33032495
Translocation	Chr8	25625955	Chr2	466037
Translocation	Chr8	25703486	Chr6	17839647	2
Translocation	Chr8	25703863	Chr6	21212545	2
Translocation	Chr8	26337317	Chr1	14359818
Translocation	Chr11	27797915	Chr5	23589778	2
Translocation	Chr11	28758138	Chr8	17178870

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