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Mutant Information

Mutant NameFN1638-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN1638-S Alignment File
Seed AvailabilityYes [Order Seeds]
Phenotype
  • TO:0000326 (Leaf Color) = Normal
  • TO:0000137 (Days to heading) = Normal (Between 75% and 125%)
  • TO:0000430 (Germination Rate) = Normal (Between 75% and 125%)
For more information, please see this phenotype file
Mapping
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Variant Information

Single base substitutions: 38
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr127226548C-THETUTR_3_PRIME
SBSChr140380146C-THETINTERGENIC
SBSChr1866679A-CHETNON_SYNONYMOUS_CODINGLOC_Os01g02600
SBSChr1013397231C-AHETINTRON
SBSChr1120766034G-AHomoINTRON
SBSChr11378053G-AHomoINTERGENIC
SBSChr1212387847T-GHETINTRON
SBSChr1219386657A-GHETSYNONYMOUS_CODING
SBSChr1220427582C-THETINTERGENIC
SBSChr1224527560G-AHomoSYNONYMOUS_CODING
SBSChr1224726149G-THomoINTERGENIC
SBSChr1227372356G-AHETSYNONYMOUS_CODING
SBSChr227589543A-GHETINTERGENIC
SBSChr29349022G-AHETNON_SYNONYMOUS_CODINGLOC_Os02g16400
SBSChr32860921G-AHomoINTERGENIC
SBSChr335352370A-CHETINTRON
SBSChr42214545C-THETINTERGENIC
SBSChr427331286G-AHETINTERGENIC
SBSChr427920078A-THETINTRON
SBSChr428891450T-CHETINTERGENIC
SBSChr515923167G-THETINTERGENIC
SBSChr517227409A-THomoINTERGENIC
SBSChr528338780C-AHETNON_SYNONYMOUS_CODINGLOC_Os05g49420
SBSChr528484830G-THETINTERGENIC
SBSChr57286847A-GHETINTERGENIC
SBSChr616398731G-THomoSYNONYMOUS_CODING
SBSChr616398732C-THomoSYNONYMOUS_CODING
SBSChr620533964A-GHETINTERGENIC
SBSChr710787587C-GHETNON_SYNONYMOUS_CODINGLOC_Os07g18190
SBSChr711838885T-AHETINTERGENIC
SBSChr713843551G-AHETINTERGENIC
SBSChr717654062G-AHETINTERGENIC
SBSChr75504914G-AHomoINTRON
SBSChr813573487C-THETINTRON
SBSChr816175887A-GHETINTERGENIC
SBSChr88783T-CHETINTERGENIC
SBSChr91297502T-CHETINTERGENIC
SBSChr917071614T-CHomoINTERGENIC

Deletions: 26
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr7149110514911061
DeletionChr3245760124576032
DeletionChr4347716434771651
DeletionChr2519953551995361
DeletionChr5759037975903823
DeletionChr4796292079629211
DeletionChr78582113858214936
DeletionChr11956636895663691
DeletionChr797196169720401785LOC_Os07g16570
DeletionChr7984311998431212LOC_Os07g16770
DeletionChr7100336801004199783173
DeletionChr6102304921023051220
DeletionChr711772048117720513
DeletionChr713354547133545481LOC_Os07g23640
DeletionChr714569546145695515
DeletionChr514614374146143751LOC_Os05g25210
DeletionChr81480900114875000660008
DeletionChr7150753001507532020LOC_Os07g26210
DeletionChr2196195371961955114
DeletionChr620779636207796382
DeletionChr222376486223764904
DeletionChr1222841356228413582
DeletionChr624845788248457891
DeletionChr331757262317572631
DeletionChr331888018318880213
DeletionChr141028458410284624

Insertions: 12
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr10662685566268551
InsertionChr1217835352178353554
InsertionChr229904438299044392
InsertionChr425616524256165241
InsertionChr435302628353026281
InsertionChr5364066936406702
InsertionChr5683194468319441
InsertionChr712555072125550732
InsertionChr821122029211220291
InsertionChr88653811865387565
InsertionChr919168294191682952
InsertionChr9601194760119471

Inversions: 4
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr571478667592420LOC_Os05g13700
InversionChr32592038527057022
InversionChr32663815326812166
InversionChr32663822226812176

No Translocation