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Mutant Information

Mutant Name	FN1641-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1641-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16726219	G-A	HET	INTERGENIC
SBS	Chr1	34383495	G-A	Homo	INTERGENIC
SBS	Chr1	34394491	C-T	Homo	INTERGENIC
SBS	Chr10	4609160	C-T	Homo	INTERGENIC
SBS	Chr11	15678781	G-A	Homo	INTRON
SBS	Chr12	13648089	T-G	HET	INTERGENIC
SBS	Chr12	26753844	A-C	HET	INTRON
SBS	Chr2	10021217	T-A	HET	INTERGENIC
SBS	Chr2	19940608	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g33530
SBS	Chr2	24243541	G-C	HET	INTERGENIC
SBS	Chr2	7471059	T-C	HET	INTERGENIC
SBS	Chr3	4777091	T-A	Homo	INTERGENIC
SBS	Chr4	20506237	C-T	Homo	INTERGENIC
SBS	Chr4	21647912	C-T	Homo	INTERGENIC
SBS	Chr6	15131106	G-T	Homo	INTERGENIC
SBS	Chr7	16536956	A-T	HET	INTERGENIC
SBS	Chr7	28588910	T-C	HET	INTRON
SBS	Chr8	22302187	A-G	HET	INTERGENIC
SBS	Chr8	23879497	G-A	HET	INTERGENIC
SBS	Chr9	15305989	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr9	22415865	G-A	HET	INTERGENIC

Deletions: 35

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1507447	1515731	8284	LOC_Os04g03490
Deletion	Chr2	1893860	1893868	8	LOC_Os02g04290
Deletion	Chr8	2479310	2479311	1
Deletion	Chr10	2689214	2689217	3
Deletion	Chr12	3649431	3649436	5
Deletion	Chr11	4033435	4033441	6
Deletion	Chr3	4451463	4451465	2
Deletion	Chr12	4851727	4859131	7404	2
Deletion	Chr11	4882053	4882057	4
Deletion	Chr11	4925001	4971000	46000	10
Deletion	Chr8	6298791	6298792	1
Deletion	Chr10	7069927	7069928	1
Deletion	Chr11	7717483	7717484	1
Deletion	Chr1	8113798	8113822	24
Deletion	Chr11	11722420	11722421	1
Deletion	Chr7	11804504	11804506	2
Deletion	Chr2	12107490	12107516	26	LOC_Os02g20530
Deletion	Chr7	13691275	13691286	11
Deletion	Chr11	14213465	14213466	1
Deletion	Chr9	14613932	14613933	1
Deletion	Chr10	15211020	15211021	1
Deletion	Chr6	15297588	15297589	1	LOC_Os06g26150
Deletion	Chr3	15300188	15300198	10
Deletion	Chr12	17722716	17745234	22518	3
Deletion	Chr7	18221749	18221753	4
Deletion	Chr7	18248882	18248884	2
Deletion	Chr8	22657147	22657150	3	LOC_Os08g35930
Deletion	Chr2	23936081	23936490	409
Deletion	Chr2	28025320	28025341	21
Deletion	Chr4	28390961	28390972	11
Deletion	Chr7	28609024	28609031	7
Deletion	Chr7	29168579	29168581	2
Deletion	Chr2	31863839	31863860	21
Deletion	Chr1	34657462	34657463	1
Deletion	Chr2	34936255	34936265	10	LOC_Os02g57050

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	211868	211885	18
Insertion	Chr3	8645699	8645699	1
Insertion	Chr5	18832874	18832875	2
Insertion	Chr6	19211692	19211692	1	LOC_Os06g33000
Insertion	Chr8	2948949	2948949	1	LOC_Os08g05520
Insertion	Chr9	22842658	22842661	4

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr2	7425355	9453335
Inversion	Chr6	10076967	10444610
Inversion	Chr6	10076981	10444610

No Translocation

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