Search Nipponbare

Mutant Information

Mutant Name	FN1644-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1644-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25586215	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g45070
SBS	Chr1	36157651	C-A	HET	INTERGENIC
SBS	Chr1	39605689	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g68120
SBS	Chr11	20326548	C-T	HET	INTERGENIC
SBS	Chr12	24242495	C-T	Homo	INTERGENIC
SBS	Chr2	1537019	C-T	HET	INTERGENIC
SBS	Chr2	24069318	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g39840
SBS	Chr4	458635	C-T	Homo	INTERGENIC
SBS	Chr5	1321768	G-A	HET	INTERGENIC
SBS	Chr6	1534588	T-A	HET	INTERGENIC
SBS	Chr6	16769530	A-G	Homo	INTRON
SBS	Chr6	25538880	T-A	HET	INTERGENIC
SBS	Chr6	7317054	A-G	Homo	INTERGENIC
SBS	Chr7	15831433	C-A	Homo	INTERGENIC
SBS	Chr7	4777753	A-T	Homo	INTERGENIC
SBS	Chr7	6512815	C-T	Homo	INTERGENIC
SBS	Chr8	19499969	A-C	HET	INTERGENIC
SBS	Chr9	19541952	T-A	HET	UTR_3_PRIME
SBS	Chr9	19541953	C-A	HET	UTR_3_PRIME

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	1431570	1431572	2
Deletion	Chr7	2219423	2219439	16	LOC_Os07g05030
Deletion	Chr2	4248250	4248287	37
Deletion	Chr7	4777528	4777530	2
Deletion	Chr3	6883449	6883462	13
Deletion	Chr11	6941212	6963774	22562	5
Deletion	Chr3	7048484	7048488	4	LOC_Os03g13040
Deletion	Chr7	7830020	7830022	2
Deletion	Chr6	11768306	11768308	2
Deletion	Chr8	12230869	12230871	2
Deletion	Chr10	13028100	13028105	5
Deletion	Chr11	13914200	13914201	1
Deletion	Chr11	15334207	15334208	1
Deletion	Chr7	15574278	15574280	2
Deletion	Chr9	17506214	17506227	13
Deletion	Chr5	18447209	18447238	29
Deletion	Chr12	18738001	18771000	33000	4
Deletion	Chr11	18993001	19027000	34000	5
Deletion	Chr3	19082809	19082813	4
Deletion	Chr6	20140051	20140068	17
Deletion	Chr11	21092084	21092100	16
Deletion	Chr5	28241527	28241535	8
Deletion	Chr5	28289227	28289237	10
Deletion	Chr4	32050001	32133000	83000	15
Deletion	Chr2	33298510	33298511	1
Deletion	Chr1	41479031	41479036	5

Insertions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	26329577	26329599	23
Insertion	Chr10	19224782	19224831	50
Insertion	Chr10	3219219	3219219	1
Insertion	Chr11	17021899	17021902	4
Insertion	Chr12	25900257	25900258	2
Insertion	Chr2	24419327	24419334	8
Insertion	Chr2	25125213	25125216	4
Insertion	Chr2	8702749	8702749	1	LOC_Os02g15520
Insertion	Chr2	9555653	9555667	15	LOC_Os02g16740
Insertion	Chr4	20326665	20326665	1
Insertion	Chr5	7413933	7414011	79
Insertion	Chr6	29472167	29472168	2
Insertion	Chr7	24762592	24762595	4
Insertion	Chr8	13622825	13622825	1
Insertion	Chr8	14891719	14891719	1
Insertion	Chr8	27742325	27742325	1
Insertion	Chr9	19804797	19804798	2

No Inversion

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	15284223	Chr10	15776443
Translocation	Chr11	24994382	Chr4	17873678
Translocation	Chr4	34006563	Chr3	18216865	LOC_Os03g31839

Main menu