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Mutant Information

Mutant Name	FN1645-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1645-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3393632	G-A	Homo	INTERGENIC
SBS	Chr1	36357654	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g62780
SBS	Chr1	36357655	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g62780
SBS	Chr2	30998206	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g50760
SBS	Chr3	33217515	T-C	HET	INTERGENIC
SBS	Chr5	3822295	C-A	HET	INTERGENIC
SBS	Chr5	11940801	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g20370
SBS	Chr6	7046805	T-A	HET	INTERGENIC
SBS	Chr6	7046806	T-A	HET	INTERGENIC
SBS	Chr6	13793081	T-G	Homo	INTERGENIC
SBS	Chr6	30436203	G-A	Homo	INTRON
SBS	Chr7	7828659	G-A	HET	INTRON
SBS	Chr7	16243224	G-A	HET	SYNONYMOUS_CODING
SBS	Chr7	19328875	G-A	HET	INTRON
SBS	Chr8	3945477	C-T	Homo	INTERGENIC
SBS	Chr8	13777220	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	25056925	T-A	HET	INTERGENIC
SBS	Chr10	22650803	C-T	HET	SYNONYMOUS_CODING
SBS	Chr11	10400924	C-T	HET	INTRON
SBS	Chr11	23839953	G-C	HET	INTERGENIC
SBS	Chr12	13158752	A-T	Homo	INTERGENIC

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	727062	727070	8
Deletion	Chr6	4030964	4030970	6
Deletion	Chr9	4458433	4458434	1
Deletion	Chr1	4497868	4497871	3	LOC_Os01g08970
Deletion	Chr8	5077582	5077627	45
Deletion	Chr4	6186984	6186988	4	LOC_Os04g11330
Deletion	Chr7	7051152	7051153	1
Deletion	Chr1	8295892	8295894	2	LOC_Os01g14830
Deletion	Chr11	9146310	9146311	1
Deletion	Chr5	11940794	11940796	2	LOC_Os05g20370
Deletion	Chr8	12445576	12445577	1
Deletion	Chr9	12817580	12817581	1
Deletion	Chr11	13631614	13631623	9
Deletion	Chr2	14431210	14432036	826	LOC_Os02g24890
Deletion	Chr9	14570480	14570481	1
Deletion	Chr12	15016388	15016389	1
Deletion	Chr5	15219915	15219939	24
Deletion	Chr9	18157597	18157598	1
Deletion	Chr2	19276521	19276530	9
Deletion	Chr8	19761001	19796000	35000	5
Deletion	Chr12	20195257	20195260	3
Deletion	Chr11	20726938	20726940	2
Deletion	Chr7	22927404	22927432	28
Deletion	Chr10	23196610	23196612	2
Deletion	Chr6	24532516	24532524	8	LOC_Os06g41070
Deletion	Chr7	26558936	26558945	9
Deletion	Chr1	40713649	40713656	7

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	14224874	14224876	3
Insertion	Chr1	9571802	9571803	2
Insertion	Chr1	5722288	5722288	1	LOC_Os01g10690
Insertion	Chr1	20461838	20461840	3
Insertion	Chr3	15512121	15512130	10
Insertion	Chr3	19357977	19357977	1
Insertion	Chr4	23397502	23397554	53
Insertion	Chr6	700093	700094	2
Insertion	Chr11	13474986	13475039	54
Insertion	Chr11	18127480	18127481	2

No Inversion

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	5635177	Chr3	36385571	2
Translocation	Chr6	5637978	Chr3	36385635	LOC_Os03g64370
Translocation	Chr12	10177792	Chr5	18263261	LOC_Os12g17780
Translocation	Chr4	15518891	Chr3	31170069
Translocation	Chr2	15723261	Chr1	9625692	LOC_Os02g26780
Translocation	Chr12	27049993	Chr6	6604833

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