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Mutant Information

Mutant Name	FN1647-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1647-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3322216	C-A	HET	INTERGENIC
SBS	Chr1	22213372	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g39420
SBS	Chr1	32702689	G-A	HET	INTRON
SBS	Chr1	33012532	C-A	HET	INTERGENIC
SBS	Chr2	1925202	C-G	HET	INTERGENIC
SBS	Chr2	4242583	T-A	Homo	INTERGENIC
SBS	Chr2	30845726	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g50510
SBS	Chr3	5597119	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g10900
SBS	Chr3	15582881	A-G	Homo	INTERGENIC
SBS	Chr4	2373815	G-A	HET	INTERGENIC
SBS	Chr4	2373816	C-A	HET	INTERGENIC
SBS	Chr4	10632667	C-T	HET	INTERGENIC
SBS	Chr5	9160069	C-A	Homo	INTERGENIC
SBS	Chr5	9160070	C-A	Homo	INTERGENIC
SBS	Chr6	20442739	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g35130
SBS	Chr6	22423171	C-T	Homo	INTERGENIC
SBS	Chr6	29505563	G-A	HET	SYNONYMOUS_CODING
SBS	Chr7	6818872	G-A	HET	INTERGENIC
SBS	Chr7	7762598	A-T	HET	INTERGENIC
SBS	Chr7	14274484	C-T	HET	INTERGENIC
SBS	Chr7	18888884	T-A	HET	INTERGENIC
SBS	Chr8	16352803	C-T	Homo	INTERGENIC
SBS	Chr8	24374239	C-T	HET	INTRON
SBS	Chr9	4616791	A-T	Homo	INTERGENIC
SBS	Chr10	3471289	C-T	Homo	INTERGENIC
SBS	Chr11	1826278	A-C	HET	UTR_3_PRIME
SBS	Chr11	10286058	G-A	Homo	INTERGENIC
SBS	Chr11	14880219	T-C	HET	INTERGENIC
SBS	Chr11	23888053	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	13771822	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g24170

Deletions: 38

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	357800	357809	9
Deletion	Chr4	913001	947000	34000	4
Deletion	Chr12	2177367	2177381	14
Deletion	Chr11	2476665	2476669	4	LOC_Os11g05490
Deletion	Chr7	4736763	4736770	7
Deletion	Chr5	5105637	5105647	10
Deletion	Chr10	5114807	5114840	33
Deletion	Chr11	5729135	5729171	36	LOC_Os11g10490
Deletion	Chr3	6103566	6103567	1
Deletion	Chr2	7706971	7706987	16
Deletion	Chr1	10463156	10463167	11
Deletion	Chr7	11341084	11341085	1
Deletion	Chr6	11646038	11646039	1
Deletion	Chr2	12214208	12214215	7
Deletion	Chr11	13114953	13114962	9
Deletion	Chr8	13583682	13583685	3
Deletion	Chr12	13855860	13855861	1
Deletion	Chr1	14112882	14112890	8
Deletion	Chr4	15936494	15936495	1
Deletion	Chr9	16287043	16287063	20	LOC_Os09g26800
Deletion	Chr1	16398474	16398481	7
Deletion	Chr1	16473544	16473545	1
Deletion	Chr9	17711843	17711845	2
Deletion	Chr6	18053214	18053215	1
Deletion	Chr1	20135500	20135505	5
Deletion	Chr2	20829230	20829231	1
Deletion	Chr10	21109830	21109836	6	LOC_Os10g39520
Deletion	Chr1	21262303	21262307	4
Deletion	Chr7	21683142	21683145	3	LOC_Os07g36270
Deletion	Chr8	22401464	22401465	1	LOC_Os08g35560
Deletion	Chr2	24449634	24449635	1
Deletion	Chr7	25225480	25225521	41
Deletion	Chr7	25801054	25801069	15
Deletion	Chr3	27102305	27102306	1	LOC_Os03g47760
Deletion	Chr4	27250516	27250518	2
Deletion	Chr2	27267582	27267607	25	LOC_Os02g45010
Deletion	Chr2	30856717	30856725	8	LOC_Os02g50530
Deletion	Chr2	34471706	34471707	1

Insertions: 18

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	8022850	8022851	2
Insertion	Chr2	1636860	1636860	1
Insertion	Chr1	3295520	3295527	8
Insertion	Chr1	23309541	23309552	12
Insertion	Chr3	7946028	7946029	2
Insertion	Chr3	23439656	23439663	8
Insertion	Chr5	1645511	1645522	12
Insertion	Chr5	5207897	5207898	2
Insertion	Chr6	15971205	15971228	24
Insertion	Chr6	19479867	19479876	10
Insertion	Chr7	1416709	1416775	67
Insertion	Chr7	8071896	8071896	1
Insertion	Chr8	431650	431650	1
Insertion	Chr10	16596747	16596786	40
Insertion	Chr10	22712276	22712315	40
Insertion	Chr11	6159375	6159375	1
Insertion	Chr11	23251303	23251362	60
Insertion	Chr12	599152	599163	12

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	11059242	11937692	2

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	19839720	Chr4	2842006	LOC_Os11g33942

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