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Mutant Information

Mutant Name	FN1648-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1648-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 12

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29980392	T-G	HET	INTERGENIC
SBS	Chr2	15177006	G-A	HET	INTERGENIC
SBS	Chr3	19800868	C-T	Homo	INTRON
SBS	Chr4	8004946	C-G	HET	INTERGENIC
SBS	Chr5	2238771	C-A	HET	INTERGENIC
SBS	Chr6	3335954	G-A	HET	INTERGENIC
SBS	Chr6	6612949	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g12290
SBS	Chr7	24321002	A-G	Homo	INTERGENIC
SBS	Chr7	25699003	T-A	Homo	UTR_3_PRIME
SBS	Chr11	26491992	T-A	Homo	INTRON
SBS	Chr12	3102253	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr12	8831071	A-G	Homo	INTRON

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	53932	53933	1
Deletion	Chr10	2275451	2275453	2
Deletion	Chr12	3062796	3062810	14	LOC_Os12g06380
Deletion	Chr7	4233450	4233451	1
Deletion	Chr12	8006879	8006881	2
Deletion	Chr4	10168707	10168712	5	LOC_Os04g18410
Deletion	Chr12	11525674	11525675	1	LOC_Os12g19770
Deletion	Chr2	12440626	12440630	4
Deletion	Chr11	17212920	17212921	1
Deletion	Chr5	17711119	17711127	8
Deletion	Chr4	18831260	18831261	1
Deletion	Chr12	19436910	19436968	58
Deletion	Chr11	24501001	24566000	65000	10
Deletion	Chr7	25374370	25374385	15	LOC_Os07g42400
Deletion	Chr8	25644828	25644831	3	LOC_Os08g40510
Deletion	Chr3	25755573	25755926	353
Deletion	Chr1	29981213	29981223	10
Deletion	Chr2	30311122	30311130	8
Deletion	Chr3	32872582	32872583	1

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	5567936	5567936	1
Insertion	Chr1	35793654	35793654	1	LOC_Os01g61860
Insertion	Chr1	37809685	37809704	20
Insertion	Chr3	24967324	24967325	2
Insertion	Chr5	16375533	16375534	2
Insertion	Chr6	3255931	3255932	2
Insertion	Chr6	19215919	19215919	1
Insertion	Chr7	11622429	11622450	22
Insertion	Chr12	6079218	6079219	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	27519947	28412571	LOC_Os08g43510

No Translocation