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Mutant Information

Mutant Name	FN1651-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1651-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21336361	G-A	HET	INTERGENIC
SBS	Chr1	28237059	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g49120
SBS	Chr1	29177926	G-A	HET	INTERGENIC
SBS	Chr1	36675508	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g63270
SBS	Chr10	17651306	G-A	HET	INTERGENIC
SBS	Chr12	12972810	T-A	HET	INTERGENIC
SBS	Chr12	147115	C-T	HET	INTERGENIC
SBS	Chr12	3944508	G-A	HET	INTERGENIC
SBS	Chr12	6590605	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g12020
SBS	Chr2	32030635	C-T	Homo	INTRON
SBS	Chr2	3988849	A-G	HET	INTERGENIC
SBS	Chr2	4429006	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g08340
SBS	Chr2	4429007	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g08340
SBS	Chr3	28339182	G-T	HET	INTERGENIC
SBS	Chr3	295595	T-C	Homo	UTR_3_PRIME
SBS	Chr4	18946047	T-C	HET	INTERGENIC
SBS	Chr4	2269511	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g04720
SBS	Chr4	34600717	A-T	HET	INTERGENIC
SBS	Chr4	34811673	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g58550
SBS	Chr5	16885890	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g28800
SBS	Chr7	26677878	A-G	HET	INTRON
SBS	Chr7	27740125	C-A	HET	INTERGENIC
SBS	Chr7	5651941	C-T	Homo	INTERGENIC
SBS	Chr7	6357021	C-T	Homo	INTERGENIC
SBS	Chr8	15652099	G-T	HET	INTERGENIC
SBS	Chr8	18756954	T-A	HET	INTERGENIC
SBS	Chr8	7010340	G-T	HET	INTRON
SBS	Chr9	4543785	G-T	HET	INTERGENIC

Deletions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1082053	1082054	1	LOC_Os08g02610
Deletion	Chr8	2924001	2960000	36000	4
Deletion	Chr5	5374837	5374845	8
Deletion	Chr6	6809703	6809704	1	LOC_Os06g12560
Deletion	Chr11	7143001	7173000	30000	3
Deletion	Chr4	9615299	9615304	5
Deletion	Chr12	10616980	10616987	7
Deletion	Chr9	11379641	11379650	9
Deletion	Chr7	12850502	12850538	36
Deletion	Chr5	13437957	13437960	3
Deletion	Chr10	14021197	14025222	4025
Deletion	Chr2	14453956	14453960	4	LOC_Os02g24930
Deletion	Chr10	15083802	15083824	22
Deletion	Chr4	15966211	15966255	44
Deletion	Chr5	16885296	16885383	87
Deletion	Chr5	16958920	16958932	12
Deletion	Chr3	17798861	17798877	16
Deletion	Chr12	18027836	18027841	5
Deletion	Chr12	18035212	18035217	5
Deletion	Chr9	19210546	19210553	7
Deletion	Chr2	19634333	19634334	1
Deletion	Chr6	19743780	19743785	5
Deletion	Chr7	20529001	20607000	78000	10
Deletion	Chr1	21336356	21336357	1
Deletion	Chr1	22136040	22136049	9
Deletion	Chr11	22524136	22524903	767	LOC_Os11g37990
Deletion	Chr12	22856904	22856936	32
Deletion	Chr12	22941095	22941096	1
Deletion	Chr4	25606725	25606726	1
Deletion	Chr3	25638672	25638675	3	LOC_Os03g45420
Deletion	Chr8	25852694	25852695	1
Deletion	Chr8	26172295	26172307	12
Deletion	Chr2	32223953	32223954	1
Deletion	Chr2	32230211	32230224	13	LOC_Os02g52690

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	24197549	24197549	1
Insertion	Chr2	26608218	26608221	4
Insertion	Chr2	29891598	29891598	1
Insertion	Chr5	15837807	15837812	6

No Inversion

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	3927134	Chr1	39625738	LOC_Os01g68160
Translocation	Chr7	11836167	Chr1	13837383
Translocation	Chr11	28214852	Chr6	26628334

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