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Mutant Information

Mutant Name	FN1652-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1652-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25304244	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g44150
SBS	Chr2	3370070	G-C	HET	INTERGENIC
SBS	Chr2	12664173	C-T	HET	INTRON
SBS	Chr2	30277452	G-T	Homo	INTRON
SBS	Chr3	22753326	C-T	HET	INTERGENIC
SBS	Chr3	30372171	T-C	Homo	INTRON
SBS	Chr4	15937864	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g26940
SBS	Chr4	19950274	G-T	Homo	INTERGENIC
SBS	Chr4	21424412	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g35250
SBS	Chr4	28032461	G-A	HET	INTERGENIC
SBS	Chr5	2675978	T-C	HET	INTRON
SBS	Chr5	8299214	A-T	HET	INTERGENIC
SBS	Chr5	18474461	G-C	Homo	INTERGENIC
SBS	Chr5	29404554	T-C	Homo	INTERGENIC
SBS	Chr6	4421190	G-A	HET	INTERGENIC
SBS	Chr6	25999647	T-G	HET	INTERGENIC
SBS	Chr6	27383114	G-T	HET	INTERGENIC
SBS	Chr7	4169474	A-G	HET	INTERGENIC
SBS	Chr7	4761142	C-T	HET	INTERGENIC
SBS	Chr7	6894587	C-T	HET	INTERGENIC
SBS	Chr7	10682045	A-T	HET	INTRON
SBS	Chr7	20989486	T-C	Homo	INTERGENIC
SBS	Chr8	1466079	T-A	HET	INTERGENIC
SBS	Chr10	18189744	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g34078
SBS	Chr12	2340456	A-G	Homo	INTERGENIC
SBS	Chr12	18073290	G-C	HET	INTERGENIC
SBS	Chr12	19634794	C-A	HET	UTR_5_PRIME
SBS	Chr12	20840590	C-G	HET	INTRON

Deletions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	303733	303734	1	LOC_Os04g01439
Deletion	Chr6	1118471	1118472	1
Deletion	Chr9	1718747	1718751	4
Deletion	Chr7	2522472	2522486	14
Deletion	Chr9	2955207	2955216	9
Deletion	Chr3	4213739	4213740	1
Deletion	Chr2	4855718	4855719	1
Deletion	Chr3	5087176	5087177	1
Deletion	Chr8	5322850	5322851	1	LOC_Os08g09190
Deletion	Chr10	7971922	7971924	2
Deletion	Chr11	8653721	8668151	14430	2
Deletion	Chr11	10577806	10580203	2397
Deletion	Chr1	10582536	10582538	2
Deletion	Chr9	11136700	11136705	5
Deletion	Chr7	11939483	11939494	11
Deletion	Chr11	12913022	12913024	2
Deletion	Chr10	13461237	13461280	43
Deletion	Chr9	15030001	15065000	35000	3
Deletion	Chr12	15242197	15242259	62
Deletion	Chr5	15646261	15646270	9
Deletion	Chr6	15931508	15931517	9	LOC_Os06g28060
Deletion	Chr4	17930001	18014000	84000	14
Deletion	Chr5	21000213	21000215	2
Deletion	Chr11	24108468	24108470	2
Deletion	Chr5	24595778	24595779	1	LOC_Os05g42020
Deletion	Chr8	25066926	25066931	5
Deletion	Chr11	25335051	25335054	3	LOC_Os11g42080
Deletion	Chr8	25358546	25358548	2
Deletion	Chr6	26941202	26941203	1
Deletion	Chr4	29429934	29430712	778
Deletion	Chr6	29488817	29488829	12
Deletion	Chr4	29964345	29964356	11

Insertions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	27134019	27134020	2	LOC_Os01g47470
Insertion	Chr1	35770112	35770113	2
Insertion	Chr1	40137248	40137248	1
Insertion	Chr1	9464647	9464652	6
Insertion	Chr2	11491965	11491966	2
Insertion	Chr2	16502527	16502574	48
Insertion	Chr2	16768901	16768973	73
Insertion	Chr4	1083982	1083982	1
Insertion	Chr5	16128616	16128617	2
Insertion	Chr8	26736967	26736972	6
Insertion	Chr10	15723646	15723647	2
Insertion	Chr10	20706353	20706368	16
Insertion	Chr11	16655549	16655549	1
Insertion	Chr11	22126211	22126288	78
Insertion	Chr12	6025504	6025504	1
Insertion	Chr12	23064310	23064310	1
Insertion	Chr12	23213440	23213441	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	26442198	28074921
Inversion	Chr4	26947220	28074936

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	27049947	Chr6	6604590	LOC_Os06g12270

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