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Mutant Information

Mutant Name	FN1657-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1657-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9574459	G-A	HET	INTERGENIC
SBS	Chr2	12827055	G-A	Homo	INTRON
SBS	Chr2	32398023	A-T	Homo	INTERGENIC
SBS	Chr3	5349378	T-C	HET	INTRON
SBS	Chr3	6806510	G-A	HET	SYNONYMOUS_CODING
SBS	Chr3	17197108	A-G	HET	INTERGENIC
SBS	Chr3	20912052	T-C	HET	INTERGENIC
SBS	Chr3	29419488	C-A	HET	INTERGENIC
SBS	Chr4	32368263	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g54400
SBS	Chr5	12600206	C-A	HET	INTERGENIC
SBS	Chr5	13268651	C-A	HET	INTERGENIC
SBS	Chr6	15358021	C-A	HET	INTRON
SBS	Chr6	31094991	A-G	Homo	INTERGENIC
SBS	Chr7	6890549	T-A	Homo	INTERGENIC
SBS	Chr7	21709894	A-C	Homo	INTRON
SBS	Chr8	8495175	C-T	HET	SYNONYMOUS_CODING
SBS	Chr8	23046442	C-T	HET	INTERGENIC
SBS	Chr8	26937449	C-T	HET	INTERGENIC
SBS	Chr8	28181135	C-A	HET	INTRON
SBS	Chr9	15661595	G-A	Homo	INTERGENIC
SBS	Chr9	16361268	C-A	Homo	INTERGENIC
SBS	Chr11	12945143	C-A	HET	STOP_GAINED	LOC_Os11g22530
SBS	Chr11	13929152	C-T	HET	INTERGENIC
SBS	Chr11	15126081	G-A	HET	INTERGENIC
SBS	Chr11	15342707	T-C	HET	UTR_3_PRIME
SBS	Chr12	15943162	T-G	Homo	INTERGENIC

Deletions: 36

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1097680	1097688	8
Deletion	Chr11	2091754	2091763	9
Deletion	Chr10	4103001	4191000	88000	10
Deletion	Chr8	4718348	4718359	11	LOC_Os08g08250
Deletion	Chr5	4780343	4780346	3	LOC_Os05g08720
Deletion	Chr8	5843854	5843859	5	LOC_Os08g10070
Deletion	Chr10	6226775	6226792	17
Deletion	Chr10	6510187	6510203	16	LOC_Os10g11750
Deletion	Chr2	6850813	6850836	23
Deletion	Chr8	6942174	6942175	1
Deletion	Chr4	7112959	7112961	2
Deletion	Chr12	7588384	7588545	161
Deletion	Chr6	8779996	8780008	12
Deletion	Chr12	9238951	9238955	4
Deletion	Chr4	9832108	9832112	4
Deletion	Chr6	10329237	10329238	1
Deletion	Chr12	10579475	10579477	2	LOC_Os12g18330
Deletion	Chr12	11764527	11764538	11
Deletion	Chr11	11816089	11816094	5	LOC_Os11g20420
Deletion	Chr6	12451735	12451747	12
Deletion	Chr3	13683886	13683887	1
Deletion	Chr11	14265367	14265368	1
Deletion	Chr2	14374643	14374646	3
Deletion	Chr7	19130278	19130300	22
Deletion	Chr9	19234642	19234655	13
Deletion	Chr3	19884001	19917000	33000	5
Deletion	Chr2	19962404	19962405	1
Deletion	Chr3	20579976	20579988	12
Deletion	Chr12	20980969	20980971	2
Deletion	Chr4	21904768	21904776	8
Deletion	Chr7	25935551	25935554	3
Deletion	Chr3	26556621	26556635	14
Deletion	Chr5	29594295	29594299	4
Deletion	Chr2	34164920	34164925	5
Deletion	Chr1	37381723	37381724	1	LOC_Os01g64410
Deletion	Chr1	43031522	43031523	1	LOC_Os01g74260

Insertions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	18413261	18413262	2
Insertion	Chr2	34109073	34109073	1	LOC_Os02g55698
Insertion	Chr10	22436907	22436907	1
Insertion	Chr1	19519264	19519269	6
Insertion	Chr3	4882033	4882033	1
Insertion	Chr3	6525773	6525773	1
Insertion	Chr3	22117637	22117638	2
Insertion	Chr4	6033345	6033346	2	LOC_Os04g11090
Insertion	Chr4	8129447	8129447	1
Insertion	Chr4	8607098	8607138	41
Insertion	Chr4	16789079	16789079	1
Insertion	Chr5	9906759	9906759	1
Insertion	Chr9	19701113	19701113	1
Insertion	Chr10	11737241	11737254	14
Insertion	Chr11	6799259	6799259	1
Insertion	Chr12	19957888	19957893	6

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	2840059	4075206	2
Inversion	Chr5	16189829	16483804	LOC_Os05g28180
Inversion	Chr5	16189843	16483818	LOC_Os05g28180

No Translocation

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