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Mutant Information

Variant Information

Single base substitutions: 45

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16779637	T-G	HET
SBS	Chr1	23558315	G-A	Homo
SBS	Chr1	25469575	G-A	HET
SBS	Chr1	37304413	G-C	Homo
SBS	Chr1	38653332	G-T	Homo
SBS	Chr2	4168161	T-C	Homo
SBS	Chr2	15157284	G-T	HET
SBS	Chr2	17186373	A-G	HET
SBS	Chr2	18057874	C-G	HET
SBS	Chr2	26048605	C-T	Homo
SBS	Chr3	15243749	A-T	Homo
SBS	Chr3	19971746	A-G	HET
SBS	Chr3	21017393	G-A	Homo
SBS	Chr3	22270275	T-A	Homo
SBS	Chr3	30521747	T-A	HET
SBS	Chr4	26721388	C-T	Homo
SBS	Chr5	259852	T-C	Homo
SBS	Chr5	3913797	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g07350
SBS	Chr5	10259843	C-G	Homo
SBS	Chr5	13436916	G-T	Homo
SBS	Chr5	25539264	C-T	HET
SBS	Chr6	13895693	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g23780
SBS	Chr6	16196322	A-T	HET
SBS	Chr6	24213373	A-G	HET
SBS	Chr7	15237861	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g26490
SBS	Chr7	19065533	G-A	Homo
SBS	Chr7	19065535	C-A	Homo
SBS	Chr7	22073714	C-T	Homo
SBS	Chr8	1396769	G-T	Homo
SBS	Chr8	7109349	G-A	Homo
SBS	Chr8	12000805	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g20030
SBS	Chr9	5495450	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g10080
SBS	Chr9	13225981	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g21820
SBS	Chr10	2479073	C-T	HET
SBS	Chr10	2479074	G-T	HET
SBS	Chr10	10556292	T-A	Homo
SBS	Chr10	17308774	G-A	HET
SBS	Chr10	18799365	G-A	Homo
SBS	Chr10	19201891	T-C	Homo
SBS	Chr10	19650955	T-A	Homo
SBS	Chr11	2661505	G-A	Homo
SBS	Chr11	11448423	C-A	HET
SBS	Chr11	11477660	G-A	Homo
SBS	Chr12	13311053	C-A	HET
SBS	Chr12	24125136	T-C	HET

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	4264925	4264939	14
Deletion	Chr5	4283918	4283925	7	LOC_Os05g07910
Deletion	Chr9	7253929	7253998	69
Deletion	Chr10	9097300	9097304	4
Deletion	Chr7	10225285	10225286	1
Deletion	Chr12	11347039	11347042	3
Deletion	Chr5	12489650	12489651	1
Deletion	Chr12	13740523	13740529	6
Deletion	Chr5	13827323	13827324	1
Deletion	Chr3	15505561	15505569	8	LOC_Os03g27080
Deletion	Chr10	19631559	19631573	14
Deletion	Chr6	19806731	19806734	3	LOC_Os06g34010
Deletion	Chr2	35288623	35288637	14
Deletion	Chr1	38522457	38522458	1	LOC_Os01g66330
Deletion	Chr1	39012022	39012038	16

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr9	21478779	21478780	2
Insertion	Chr12	2473716	2473717	2
Insertion	Chr12	22723266	22723267	2
Insertion	Chr1	19749394	19749394	1
Insertion	Chr12	7340110	7340110	1
Insertion	Chr12	24369131	24369132	2

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	787919	1261738	2
Inversion	Chr6	787926	1261745	2
Inversion	Chr3	1399937	1400264	LOC_Os03g03260
Inversion	Chr2	3276655	3276933
Inversion	Chr9	7777318	7777758
Inversion	Chr5	17157773	17158035	2
Inversion	Chr3	17332280	17332596

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	644653	Chr2	16487695
Translocation	Chr8	645289	Chr7	28994513	2
Translocation	Chr8	647705	Chr7	28994504	2
Translocation	Chr8	647718	Chr3	15426300
Translocation	Chr8	656261	Chr3	15425534	LOC_Os08g02030
Translocation	Chr12	696990	Chr11	652946	LOC_Os12g02240
Translocation	Chr10	4258782	Chr4	4257957
Translocation	Chr4	15932829	Chr3	13456995	2
Translocation	Chr12	25707765	Chr10	9381467	2
Translocation	Chr11	25840027	Chr1	15531752
Translocation	Chr11	27858310	Chr1	3226367	LOC_Os11g46020

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