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Mutant Information

Mutant Name	FN1661-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1661-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 20

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	37372463	C-T	Homo	INTERGENIC
SBS	Chr1	37798476	A-G	Homo	INTERGENIC
SBS	Chr1	3963260	G-A	HET	SYNONYMOUS_CODING
SBS	Chr10	12493808	A-T	HET	INTERGENIC
SBS	Chr11	1295781	T-C	Homo	INTERGENIC
SBS	Chr11	13352749	C-G	HET	INTERGENIC
SBS	Chr2	11543059	C-T	HET	INTERGENIC
SBS	Chr2	26970858	G-A	Homo	INTERGENIC
SBS	Chr2	3380608	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g06725
SBS	Chr4	32016285	G-A	Homo	START_GAINED	LOC_Os04g53720
SBS	Chr4	8723991	C-T	HET	INTERGENIC
SBS	Chr6	14550897	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr7	13840605	A-G	HET	INTERGENIC
SBS	Chr7	22082522	T-A	HET	INTERGENIC
SBS	Chr7	23741442	A-G	HET	INTERGENIC
SBS	Chr7	26030678	C-T	HET	SYNONYMOUS_CODING
SBS	Chr8	15191081	C-A	Homo	INTRON
SBS	Chr8	18467296	G-C	HET	INTERGENIC
SBS	Chr9	16540403	C-T	HET	INTERGENIC
SBS	Chr9	1726842	C-T	HET	INTERGENIC

Deletions: 37

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	211151	211165	14	LOC_Os12g01355
Deletion	Chr12	254612	254613	1
Deletion	Chr11	2773206	2773212	6
Deletion	Chr7	3013001	3098000	85000	16
Deletion	Chr7	3816954	3816963	9	LOC_Os07g07610
Deletion	Chr4	4924484	4924487	3	LOC_Os04g09260
Deletion	Chr6	5066571	5066574	3
Deletion	Chr6	5066574	5066577	3
Deletion	Chr3	6926901	6926904	3
Deletion	Chr9	7852891	7852892	1	LOC_Os09g13540
Deletion	Chr8	10644225	10644238	13
Deletion	Chr8	10854060	10854265	205
Deletion	Chr7	12416461	12416509	48
Deletion	Chr7	12866768	12866776	8
Deletion	Chr6	12949651	12949652	1
Deletion	Chr4	13696220	13696221	1
Deletion	Chr5	13950693	13950702	9
Deletion	Chr7	14215533	14215537	4
Deletion	Chr6	17697759	17697760	1
Deletion	Chr5	19345779	19345780	1
Deletion	Chr12	19553696	19553717	21	LOC_Os12g32420
Deletion	Chr11	20608767	20608768	1
Deletion	Chr11	21240468	21240472	4
Deletion	Chr7	22195595	22195601	6
Deletion	Chr2	22661780	22661781	1
Deletion	Chr7	23733831	23733832	1	LOC_Os07g39600
Deletion	Chr11	23840848	23840978	130
Deletion	Chr8	25045112	25045113	1	LOC_Os08g39580
Deletion	Chr1	25374871	25374878	7
Deletion	Chr7	25846520	25846524	4
Deletion	Chr5	25983421	25983428	7
Deletion	Chr7	27165670	27165673	3
Deletion	Chr6	27526271	27526272	1
Deletion	Chr2	29748361	29748363	2
Deletion	Chr3	35244492	35244499	7
Deletion	Chr1	37418262	37418265	3	LOC_Os01g64490
Deletion	Chr1	38275416	38275419	3	LOC_Os01g65920

Insertions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	10767261	10767270	10
Insertion	Chr11	12086560	12086612	53
Insertion	Chr12	9490478	9490479	2
Insertion	Chr3	24042411	24042412	2
Insertion	Chr3	25664722	25664752	31
Insertion	Chr3	6934637	6934640	4
Insertion	Chr4	12945218	12945262	45
Insertion	Chr4	14152769	14152770	2
Insertion	Chr4	29513276	29513277	2
Insertion	Chr4	4186677	4186677	1	LOC_Os04g07860
Insertion	Chr6	18274974	18274974	1
Insertion	Chr6	18645791	18645793	3
Insertion	Chr7	11364199	11364218	20
Insertion	Chr8	13792939	13792939	1
Insertion	Chr9	604739	604750	12
Insertion	Chr9	9472339	9472340	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	26002542	26386970	LOC_Os07g43420

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	9394989	Chr2	26973811
Translocation	Chr11	17490449	Chr4	7080230
Translocation	Chr3	34394775	Chr2	31696446	2

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