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Mutant Information

Mutant Name	FN1662-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1662-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3936444	C-T	HET	INTERGENIC
SBS	Chr1	4239552	T-C	HET	INTRON
SBS	Chr1	4982892	G-A	HET	SYNONYMOUS_CODING
SBS	Chr1	20175887	C-T	Homo	INTRON
SBS	Chr2	17653375	C-T	Homo	INTERGENIC
SBS	Chr2	32207222	C-T	Homo	INTERGENIC
SBS	Chr3	5219487	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g10250
SBS	Chr4	6710518	G-A	Homo	INTRON
SBS	Chr4	10843559	C-A	HET	INTERGENIC
SBS	Chr4	13564858	G-A	HET	INTERGENIC
SBS	Chr4	14512646	A-G	HET	INTRON
SBS	Chr4	16379547	G-A	HET	INTERGENIC
SBS	Chr5	10928313	G-T	HET	INTRON
SBS	Chr5	20175278	C-A	HET	INTERGENIC
SBS	Chr5	24693868	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr6	18205781	G-A	Homo	INTERGENIC
SBS	Chr7	10940120	T-A	HET	INTERGENIC
SBS	Chr7	15181954	C-T	Homo	INTERGENIC
SBS	Chr8	16622839	A-T	HET	INTERGENIC
SBS	Chr9	17085422	C-T	HET	INTERGENIC
SBS	Chr11	1208923	A-T	HET	INTERGENIC
SBS	Chr11	13476267	C-T	HET	SYNONYMOUS_CODING
SBS	Chr11	20718859	A-G	HET	INTERGENIC
SBS	Chr11	21282244	G-A	HET	INTERGENIC
SBS	Chr11	25517760	C-T	HET	INTERGENIC
SBS	Chr12	9590142	G-A	HET	INTRON

Deletions: 37

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	150418	150421	3
Deletion	Chr11	705182	705183	1
Deletion	Chr5	900512	900519	7	LOC_Os05g02580
Deletion	Chr5	2023480	2023481	1
Deletion	Chr6	3313607	3313610	3
Deletion	Chr12	3316240	3316250	10
Deletion	Chr9	3522002	3522016	14
Deletion	Chr9	3529312	3529314	2
Deletion	Chr12	4077631	4077637	6
Deletion	Chr6	4139289	4139290	1
Deletion	Chr4	4226850	4226853	3
Deletion	Chr11	5702559	5702560	1
Deletion	Chr8	6204619	6204622	3
Deletion	Chr11	6331001	6331004	3
Deletion	Chr2	7755452	7755453	1
Deletion	Chr8	9380282	9380298	16
Deletion	Chr5	11819404	11819474	70
Deletion	Chr12	13000109	13000110	1	LOC_Os12g22990
Deletion	Chr3	13895001	13932000	37000	6
Deletion	Chr1	14130331	14130340	9
Deletion	Chr12	14245799	14245803	4	LOC_Os12g24820
Deletion	Chr3	14860760	14860766	6
Deletion	Chr9	15022001	15055000	33000	3
Deletion	Chr2	16197870	16197891	21
Deletion	Chr8	16590537	16590541	4
Deletion	Chr8	16886269	16886270	1
Deletion	Chr8	17672482	17672485	3
Deletion	Chr6	20150250	20150251	1	LOC_Os06g34670
Deletion	Chr12	20377537	20377539	2
Deletion	Chr6	23679588	23679589	1
Deletion	Chr3	23863613	23863614	1
Deletion	Chr7	24092731	24092736	5
Deletion	Chr6	25269452	25269453	1	LOC_Os06g42060
Deletion	Chr11	26449452	26449453	1
Deletion	Chr11	27620495	27620512	17
Deletion	Chr1	35659740	35659742	2	LOC_Os01g61630
Deletion	Chr1	38799040	38799048	8

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr6	2276270	2276272	3	LOC_Os06g05130
Insertion	Chr3	31100647	31100648	2
Insertion	Chr2	16949361	16949361	1	LOC_Os02g28650
Insertion	Chr2	25678710	25678751	42
Insertion	Chr5	29710421	29710423	3
Insertion	Chr6	5543356	5543358	3
Insertion	Chr6	24610240	24610241	2
Insertion	Chr6	28887929	28887930	2
Insertion	Chr7	6862804	6862805	2
Insertion	Chr8	8941178	8941178	1
Insertion	Chr9	6558056	6558057	2

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	1853130	2106164	2
Inversion	Chr1	1994304	2106158	2
Inversion	Chr7	7169400	7200394	2
Inversion	Chr7	7169465	7200396	2
Inversion	Chr6	11043998	11545587
Inversion	Chr5	11445139	11629627
Inversion	Chr3	13895524	13955315
Inversion	Chr3	13932253	13955325	LOC_Os03g24450

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	2967476	Chr1	23436212	LOC_Os04g05780
Translocation	Chr11	12597110	Chr9	1340905
Translocation	Chr10	20577014	Chr7	22025409	LOC_Os07g36760
Translocation	Chr6	21657580	Chr4	17923468	LOC_Os06g36770
Translocation	Chr7	22011588	Chr5	20489094	2

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