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Mutant Information

Mutant Name	FN1666-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1666-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	41013360	C-T	HET
SBS	Chr11	17100299	G-A	Homo
SBS	Chr11	19330294	G-A	HET
SBS	Chr11	20448659	T-A	HET
SBS	Chr11	7066489	T-C	HET
SBS	Chr11	7548442	C-T	HET
SBS	Chr12	5516099	A-T	Homo
SBS	Chr2	21195008	C-G	Homo
SBS	Chr3	11876441	A-T	HET
SBS	Chr3	22438855	C-T	HET
SBS	Chr3	33272976	C-T	HET
SBS	Chr3	5602995	T-G	HET
SBS	Chr3	9319193	A-G	HET
SBS	Chr3	9770980	C-A	HET
SBS	Chr4	12529557	G-A	HET	SPLICE_SITE_ACCEPTOR	LOC_Os04g22110
SBS	Chr4	26109894	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g44090
SBS	Chr4	26540190	T-A	HET
SBS	Chr4	27525153	A-G	HET
SBS	Chr4	27576975	A-G	HET
SBS	Chr5	22754655	A-G	HET
SBS	Chr7	12537579	A-G	HET
SBS	Chr8	11482183	G-A	HET
SBS	Chr8	17268919	C-T	HET
SBS	Chr8	19980036	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g32250
SBS	Chr8	5744942	G-A	HET
SBS	Chr8	8903194	C-G	HET

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	588778	588784	6
Deletion	Chr10	2785001	3207000	421999	57
Deletion	Chr10	3214001	3347000	132999	26
Deletion	Chr10	3351001	3695000	343999	45
Deletion	Chr10	3705001	3776000	70999	12
Deletion	Chr5	8355982	8355987	5
Deletion	Chr8	8443080	8443082	2
Deletion	Chr3	9786218	9786224	6	LOC_Os03g17590
Deletion	Chr1	11585512	11585519	7
Deletion	Chr1	13822497	13822498	1
Deletion	Chr7	14754414	14754415	1
Deletion	Chr7	18029536	18029540	4	LOC_Os07g30460
Deletion	Chr5	18468027	18468033	6
Deletion	Chr9	19131041	19131048	7
Deletion	Chr6	26095637	26095653	16
Deletion	Chr7	28743391	28743397	6	LOC_Os07g48130

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	21801324	21801324	1
Insertion	Chr11	24684971	24684974	4
Insertion	Chr12	17524861	17524862	2
Insertion	Chr4	9220952	9220952	1
Insertion	Chr6	29311611	29311611	1
Insertion	Chr6	8656151	8656159	9
Insertion	Chr8	6938292	6938292	1

Inversions: 15

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	255429	255577
Inversion	Chr5	813246	813597
Inversion	Chr6	2110615	2110849	LOC_Os06g04830
Inversion	Chr8	4632035	4632383	LOC_Os08g08140
Inversion	Chr8	6367543	6940427	LOC_Os08g10810
Inversion	Chr5	8903713	8903924	LOC_Os05g15770
Inversion	Chr11	10570027	10570166
Inversion	Chr3	11873678	12797465	2
Inversion	Chr3	11873686	12797477	2
Inversion	Chr2	13371962	13372298
Inversion	Chr9	13710615	13710894	LOC_Os09g23160
Inversion	Chr1	20874921	20875205
Inversion	Chr7	26356317	26356510	LOC_Os07g44090
Inversion	Chr4	27869547	27870021	LOC_Os04g47020
Inversion	Chr3	31613793	31614073	LOC_Os03g55560

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	2793456	Chr7	3174365
Translocation	Chr8	8401663	Chr5	3026636
Translocation	Chr12	15920791	Chr8	7185783
Translocation	Chr11	17233067	Chr3	25343025	2
Translocation	Chr8	21203280	Chr4	18656885	2
Translocation	Chr9	21246712	Chr2	18115022
Translocation	Chr11	24582027	Chr6	5741425

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