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Mutant Information

Mutant Name	FN1667-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1667-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21855993	A-T	Homo
SBS	Chr1	2968189	A-G	HET
SBS	Chr10	5947027	G-A	HET
SBS	Chr11	19027786	T-C	Homo
SBS	Chr11	21713821	C-G	HET
SBS	Chr12	10507509	G-A	HET
SBS	Chr12	10507518	C-A	HET
SBS	Chr12	11958298	G-T	HET
SBS	Chr12	11958299	T-A	HET
SBS	Chr12	18085312	T-G	HET
SBS	Chr12	18085313	G-A	HET
SBS	Chr12	20226347	T-G	HET
SBS	Chr12	22748940	A-C	HET
SBS	Chr12	8176219	C-T	HET
SBS	Chr3	24822203	A-T	HET
SBS	Chr4	35388011	G-C	Homo
SBS	Chr4	7279312	G-A	HET
SBS	Chr6	2902684	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g06280
SBS	Chr6	29144214	T-A	HET
SBS	Chr6	29144215	C-A	HET
SBS	Chr6	3645997	A-G	Homo
SBS	Chr6	456619	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g01790
SBS	Chr6	616296	C-T	Homo
SBS	Chr6	6286774	G-A	Homo
SBS	Chr6	6913132	G-A	Homo
SBS	Chr7	739180	T-A	HET
SBS	Chr8	25473788	T-C	Homo
SBS	Chr8	25718786	A-T	Homo
SBS	Chr9	13477872	C-T	Homo
SBS	Chr9	3243758	C-T	Homo
SBS	Chr9	6549343	A-T	Homo
SBS	Chr9	8417618	T-C	Homo

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	356689	356692	3
Deletion	Chr6	2654678	2654682	4
Deletion	Chr8	7274333	7274798	465	LOC_Os08g12350
Deletion	Chr9	8185983	8185987	4
Deletion	Chr8	10505891	10505965	74
Deletion	Chr10	17598997	17599005	8
Deletion	Chr1	17930597	17930600	3
Deletion	Chr9	22346707	22346709	2
Deletion	Chr1	22801267	22801269	2
Deletion	Chr1	25520454	25520461	7
Deletion	Chr3	27399675	27399681	6
Deletion	Chr4	30207893	30207899	6
Deletion	Chr3	32987875	32987879	4	LOC_Os03g57920

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	38346317	38346317	1
Insertion	Chr11	14478809	14478809	1
Insertion	Chr4	4255541	4255541	1
Insertion	Chr7	2923953	2923956	4
Insertion	Chr8	16898060	16898107	48
Insertion	Chr8	18431140	18431140	1
Insertion	Chr8	20957028	20957028	1

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	722219	722559
Inversion	Chr1	3861048	4213903	LOC_Os01g07980
Inversion	Chr1	3861050	4213911	LOC_Os01g07980
Inversion	Chr5	4276811	4367182
Inversion	Chr6	6548245	6548399
Inversion	Chr12	10230141	10524229
Inversion	Chr12	10230679	10400575	2
Inversion	Chr7	27096151	27096609

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	10230679	Chr9	20225937	2
Translocation	Chr12	10400575	Chr9	20226233	LOC_Os12g18090
Translocation	Chr8	12174567	Chr6	15762041	2
Translocation	Chr8	12174570	Chr6	15765878	LOC_Os08g20270
Translocation	Chr6	15757590	Chr1	34040916	LOC_Os06g27820
Translocation	Chr6	15762036	Chr1	34040918	LOC_Os06g27830
Translocation	Chr9	20225817	Chr6	29384563	2
Translocation	Chr9	20225929	Chr6	29384573	2

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