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Mutant Information

Mutant Name	FN1668-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1668-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1075552	G-A	HET
SBS	Chr1	19616858	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g35450
SBS	Chr1	22498714	C-T	Homo
SBS	Chr1	22663640	C-T	HET
SBS	Chr1	33991436	G-A	HET
SBS	Chr1	34083549	A-C	HET
SBS	Chr10	5924411	T-G	HET
SBS	Chr11	17531808	G-A	Homo
SBS	Chr11	4370091	A-G	Homo
SBS	Chr2	13868016	G-T	HET
SBS	Chr2	16818781	G-A	HET
SBS	Chr2	31055631	T-A	Homo
SBS	Chr2	335824	T-A	HET
SBS	Chr3	13938504	A-G	Homo
SBS	Chr3	25939135	C-G	HET
SBS	Chr3	29588685	G-A	HET
SBS	Chr3	5532446	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g10800
SBS	Chr4	34157473	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g57400
SBS	Chr5	12178208	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g20750
SBS	Chr5	15700821	T-C	HET
SBS	Chr5	7536407	A-T	HET
SBS	Chr6	3716104	T-A	Homo
SBS	Chr7	23020871	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g38320
SBS	Chr7	8099578	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g14210
SBS	Chr8	2001589	C-A	Homo
SBS	Chr9	16648204	C-T	HET
SBS	Chr9	19867417	C-T	HET

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	2163415	2163419	4
Deletion	Chr11	4373603	4373606	3
Deletion	Chr2	4513234	4513236	2
Deletion	Chr9	5084012	5084013	1
Deletion	Chr9	5472348	5472362	14
Deletion	Chr1	9946691	9946699	8	LOC_Os01g17279
Deletion	Chr11	10002733	10002734	1
Deletion	Chr4	10422025	10422026	1
Deletion	Chr12	15699181	15699188	7	LOC_Os12g26790
Deletion	Chr1	17679312	17679313	1
Deletion	Chr10	17922774	17922778	4
Deletion	Chr1	19509866	19509870	4
Deletion	Chr9	19832451	19832455	4
Deletion	Chr2	20486674	20486680	6
Deletion	Chr11	21727809	21727826	17
Deletion	Chr1	23974270	23974285	15
Deletion	Chr2	23980292	23980299	7
Deletion	Chr1	24105065	24105078	13	LOC_Os01g42400
Deletion	Chr6	29078510	29078527	17
Deletion	Chr6	29458425	29458426	1
Deletion	Chr6	30346165	30346175	10

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	12114282	12114334	53
Insertion	Chr9	21644056	21644059	4

Inversions: 13

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	308352	308710
Inversion	Chr1	1627278	1627510
Inversion	Chr9	6207433	6207869
Inversion	Chr3	12800358	12800552
Inversion	Chr11	20005327	20005596	2
Inversion	Chr2	25636605	25636812
Inversion	Chr4	26440931	26441396
Inversion	Chr5	27120871	27290825	2
Inversion	Chr5	27120927	27290834	2
Inversion	Chr3	30629570	30855290	2
Inversion	Chr3	30629617	30855291	2
Inversion	Chr2	35245427	35245616
Inversion	Chr1	40141433	40141592	LOC_Os01g69070

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	5049974	Chr4	18657034	2
Translocation	Chr3	9138528	Chr2	31054320
Translocation	Chr3	9138534	Chr2	31054377
Translocation	Chr9	11307386	Chr6	22141205

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