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Mutant Information

Mutant Name	FN1670-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1670-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13122309	G-C	HET
SBS	Chr1	20425251	T-C	HET
SBS	Chr1	25204192	A-T	HET
SBS	Chr10	12213495	G-A	HET
SBS	Chr10	12401341	A-T	HET
SBS	Chr11	14681783	C-A	Homo
SBS	Chr12	2347223	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g05270
SBS	Chr12	25200231	A-G	HET
SBS	Chr12	25498097	G-T	HET
SBS	Chr12	9957165	G-A	HET
SBS	Chr2	34697555	A-G	HET
SBS	Chr2	5720184	G-A	HET
SBS	Chr3	13502297	G-A	Homo
SBS	Chr3	19844415	C-T	Homo
SBS	Chr3	33784799	A-G	Homo
SBS	Chr3	5353286	G-A	Homo
SBS	Chr3	7248609	A-C	Homo
SBS	Chr4	1369685	C-T	Homo
SBS	Chr4	22072944	G-A	Homo
SBS	Chr4	31116973	C-T	HET
SBS	Chr4	6147210	A-T	Homo
SBS	Chr6	10029465	A-G	HET
SBS	Chr6	16600237	G-T	HET
SBS	Chr8	11781362	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g19680
SBS	Chr8	15390867	G-A	Homo
SBS	Chr8	1816990	G-A	Homo
SBS	Chr9	15787703	C-T	HET

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	3350001	3508000	157999	20
Deletion	Chr9	5210843	5210989	146
Deletion	Chr4	6294477	6294478	1
Deletion	Chr11	6449375	6449376	1
Deletion	Chr3	7185882	7185885	3
Deletion	Chr8	7726621	7726622	1
Deletion	Chr4	9681155	9681159	4
Deletion	Chr5	17134767	17134790	23
Deletion	Chr1	19741641	19741649	8	LOC_Os01g35640
Deletion	Chr5	21912001	21928000	15999	3
Deletion	Chr1	39925003	39925008	5

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	15917270	15917285	16
Insertion	Chr12	7427385	7427390	6
Insertion	Chr2	370039	370039	1
Insertion	Chr4	13773155	13773158	4
Insertion	Chr4	29016773	29016773	1
Insertion	Chr8	6088575	6088637	63

Inversions: 9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	4323503	4323895	LOC_Os07g08420
Inversion	Chr2	6586010	6586132	LOC_Os02g12600
Inversion	Chr8	11382648	11382893
Inversion	Chr8	12853828	12854348
Inversion	Chr8	14166788	14167127
Inversion	Chr11	17561366	17561672	LOC_Os11g30210
Inversion	Chr10	19947209	19947416
Inversion	Chr8	20497186	20497541
Inversion	Chr4	35480642	35480780

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	14361247	Chr4	28000672
Translocation	Chr8	16170424	Chr3	33941918	2
Translocation	Chr11	19701038	Chr4	6471230
Translocation	Chr6	20607133	Chr3	24684655
Translocation	Chr10	22736713	Chr3	25927309
Translocation	Chr7	25289280	Chr6	30259512	LOC_Os07g42250

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